CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH63090	Soybean	nucleus	27.4	51.28
KRH15123	Soybean	nucleus	77.05	49.02
KRH62980	Soybean	nucleus	29.11	42.71
VIT_14s0006g01440.t01	Wine grape	nucleus	33.56	29.43
KRH30959	Soybean	mitochondrion	25.68	27.17
PGSC0003DMT400088113	Potato	nucleus	13.36	22.67
KRH01275	Soybean	nucleus	24.32	21.26
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	13.01	19.19
PGSC0003DMT400014406	Potato	nucleus	14.04	18.98
GSMUA_Achr2P22850_001	Banana	cytosol	18.15	17.15
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	8.9	16.77
EES14943	Sorghum	nucleus	16.44	16.11
PGSC0003DMT400085647	Potato	cytosol, nucleus	14.04	15.47
TraesCS6A01G172500.1	Wheat	cytosol	14.73	15.14
Os08t0384100-01	Rice	cytosol	15.41	14.42
TraesCS6D01G161700.2	Wheat	nucleus	14.73	14.24
TraesCS6B01G200200.1	Wheat	nucleus	14.04	13.53
Zm00001d032326_P002	Maize	cytosol, plastid	15.41	12.43
KRH52961	Soybean	nucleus	15.41	12.4
KRH62246	Soybean	nucleus	15.07	12.26
KRH25014	Soybean	cytosol, nucleus, plastid	14.38	10.47
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	13.7	10.18
KRH29911	Soybean	cytosol, nucleus, plastid	13.7	9.73
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	13.7	9.73
KRG98822	Soybean	nucleus	7.88	8.49
KRG96921	Soybean	nucleus	15.41	8.36
KRH68665	Soybean	nucleus	15.07	8.16
KRH58007	Soybean	nucleus	2.4	7.78
KRG90046	Soybean	nucleus	2.4	7.78
KRH57881	Soybean	nucleus	12.33	7.14
KRH46125	Soybean	mitochondrion, nucleus	8.56	7.1
TraesCS5B01G148000.1	Wheat	plastid	5.48	4.65
TraesCS5A01G149300.1	Wheat	cytosol, plastid	5.48	4.65
EES09107	Sorghum	cytosol	5.48	4.43
Zm00001d052326_P001	Maize	cytosol	5.48	4.43

Protein Annotations

EntrezGene:102664145	Gene3D:3.30.160.20	MapMan:35.2	EMBL:ACUP02001261	EnsemblPlantsGene:GLYMA_02G246100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003725	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016787
GO:GO:0019538	GO:GO:0030422	GO:GO:0031053	GO:GO:0031054	GO:GO:0040029	GO:GO:0090502
InterPro:IPR014720	UniProt:K7KAK3	EnsemblPlants:KRH73012	ProteinID:KRH73012	ProteinID:KRH73012.1	PFAM:PF00035
PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF8	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000295D64E
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:43422742..43428429

Molecular Weight (calculated)

31502.8 Da

IEP (calculated)

9.567

GRAVY (calculated)

-0.323

Length

292 amino acids

Sequence
(BLAST)

001: MVVGKKSAMP FCYLTTLVED HLVSCCRGSW FSAGKISPFS KSIMNEYADK LHVQPTYDTV QEQLGGVLRV FKTSLVFNGT SYTGDPARTK KEAEQSAAKA
101: AILSIMGDST SGTTLIEIIK SKSTFYDAIK GKGPPLLQPS AVLSTTNTGQ ISVTLGHRDT GVTASVLDNN NNNKNIEAKV EFPESSKMLS TCQELQMIKQ
201: ESSLEANNVS LQPGSEHSID NSSTSKKRKK NKKKSNNKKL RLETPPLPIT AVSLNQVPPC TAVLINQVPP CSAVPMNQVP PFTAVPMSQV PP

Best Arabidopsis Sequence Match ( AT1G09700.1 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.