Factsheet for PGSC0003DMT400014406

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
cytosol 1
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	68.06	74.24
PGSC0003DMT400088113	Potato	nucleus	37.5	47.09
PGSC0003DMT400085647	Potato	cytosol, nucleus	41.67	33.96
KRH63090	Soybean	nucleus	24.07	33.33
KRH62980	Soybean	nucleus	28.24	30.65
VIT_14s0006g01440.t01	Wine grape	nucleus	37.5	24.32
GSMUA_Achr2P22850_001	Banana	cytosol	33.33	23.3
TraesCS6A01G172500.1	Wheat	cytosol	26.85	20.42
EES14943	Sorghum	nucleus	27.31	19.8
Os08t0384100-01	Rice	cytosol	27.31	18.91
TraesCS6D01G161700.2	Wheat	nucleus	26.39	18.87
KRH01275	Soybean	nucleus	28.7	18.56
TraesCS6B01G200200.1	Wheat	nucleus	25.93	18.48
KRH30959	Soybean	mitochondrion	22.22	17.39
Zm00001d032326_P002	Maize	cytosol, plastid	25.0	14.92
KRH15123	Soybean	nucleus	31.48	14.81
KRH73012	Soybean	nucleus	18.98	14.04
PGSC0003DMT400022469	Potato	nucleus	18.98	12.65
PGSC0003DMT400020800	Potato	nucleus	22.69	11.98
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	22.22	11.82
PGSC0003DMT400060309	Potato	cytosol, nucleus, plastid	22.22	9.49
TraesCS5A01G149300.1	Wheat	cytosol, plastid	9.72	6.1
Zm00001d052326_P001	Maize	cytosol	9.72	5.82
TraesCS5B01G148000.1	Wheat	plastid	8.8	5.52
EES09107	Sorghum	cytosol	8.33	4.99

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488
InterPro:IPR014720	UniProt:M1A463	PFAM:PF00035	EnsemblPlantsGene:PGSC0003DMG400005652	PGSC:PGSC0003DMG400005652	EnsemblPlants:PGSC0003DMT400014406
PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF8	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000296A371
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

Double-stranded RNA binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400005652]

Coordinates

chr3:-:58581977..58583337

Molecular Weight (calculated)

23956.7 Da

IEP (calculated)

10.204

GRAVY (calculated)

-0.548

Length

216 amino acids

Sequence
(BLAST)

001: MIVLHSSHAN SSGTSNVQES TARVHTKNVK QLPIYQTVNE GFPHAPKFRA KVLVDGSEYQ SKSTYPTKKE AEQAVAKIAY ECIHNKIDAR DISLIYKEPM
101: LCKSILYEFA VKRNLDRPIY NTRYTEGPSS VYICHLVLGG KTYKGELAGS KQMAKQVAAQ AAIESLLGNL QGQKASIKRA VACFNTDGIV GSSGSGPKRK
201: TETKNWERNK MRRFGN

Best Arabidopsis Sequence Match ( AT3G62800.3 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.