Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400024215 | |
| PGSC0003DMT400042918 | |
| PGSC0003DMT400057635 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G09700.1 | PGSC0003DMT400024215 | AT1G09700.1 | 15821876 |
| AT1G09700.1 | PGSC0003DMT400042918 | AT3G03300.1 | 15821876 |
| AT1G09700.1 | PGSC0003DMT400057635 | AT4G21670.1 | 23141542 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 95.07 | 89.15 |
| CDX93488 | Canola | plastid | 32.51 | 48.0 |
| Bra019999.1-P | Field mustard | plastid | 32.27 | 47.81 |
| Bra030793.1-P | Field mustard | cytosol | 31.53 | 46.04 |
| CDY20678 | Canola | cytosol | 31.03 | 45.49 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 31.53 | 45.23 |
| KRH62246 | Soybean | nucleus | 36.95 | 41.78 |
| KRH52961 | Soybean | nucleus | 37.19 | 41.6 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 31.53 | 39.88 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 38.67 | 39.25 |
| OQU82704 | Sorghum | cytosol, nucleus | 30.3 | 37.39 |
| GSMUA_Achr11P... | Banana | nucleus | 33.0 | 35.83 |
| AT1G09700.1 | Thale cress | plastid | 34.48 | 33.41 |
| KXG22802 | Sorghum | mitochondrion | 33.25 | 31.25 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 27.59 | 31.11 |
| Zm00001d005065_P002 | Maize | cytosol | 32.76 | 30.65 |
| Os05t0307400-01 | Rice | cytosol | 32.27 | 29.98 |
| TraesCS4D01G132400.1 | Wheat | cytosol | 29.06 | 28.92 |
| HORVU4Hr1G024480.3 | Barley | cytosol, nucleus | 29.06 | 28.92 |
| TraesCS4A01G180400.1 | Wheat | cytosol | 28.82 | 28.75 |
| Os11t0109900-01 | Rice | cytosol | 33.25 | 28.54 |
| TraesCS5D01G143500.2 | Wheat | nucleus | 33.5 | 25.76 |
| TraesCS5B01G148100.2 | Wheat | nucleus | 33.25 | 25.47 |
| PGSC0003DMT400088113 | Potato | nucleus | 10.34 | 24.42 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 33.25 | 24.28 |
| HORVU5Hr1G047100.5 | Barley | nucleus | 33.5 | 23.73 |
| PGSC0003DMT400014406 | Potato | nucleus | 11.82 | 22.22 |
| PGSC0003DMT400085647 | Potato | cytosol, nucleus | 13.79 | 21.13 |
| PGSC0003DMT400020800 | Potato | nucleus | 15.76 | 15.65 |
| PGSC0003DMT400022469 | Potato | nucleus | 12.32 | 15.43 |
| Os12t0109900-02 | Rice | cytosol | 15.02 | 13.2 |
| PGSC0003DMT400060309 | Potato | cytosol, nucleus, plastid | 16.26 | 13.04 |
Protein Annotations
| EntrezGene:102603097 | MapMan:16.10.2.1.2 | Gene3D:3.30.160.20 | InterPro:DRB | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0003725 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 | GO:GO:0006139 | GO:GO:0006412 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009719 | GO:GO:0009733 | GO:GO:0009735 |
| GO:GO:0009737 | GO:GO:0009987 | GO:GO:0010267 | GO:GO:0010305 | GO:GO:0010445 | GO:GO:0010589 |
| GO:GO:0019538 | GO:GO:0031054 | GO:GO:0035196 | GO:GO:0035198 | GO:GO:0035279 | GO:GO:0040029 |
| GO:GO:0042802 | InterPro:IPR014720 | UniProt:M1AJP0 | PFAM:PF00035 | EnsemblPlantsGene:PGSC0003DMG400009356 | PGSC:PGSC0003DMG400009356 |
| EnsemblPlants:PGSC0003DMT400024215 | PFscan:PS50137 | PANTHER:PTHR11207 | PANTHER:PTHR11207:SF1 | SMART:SM00358 | SUPFAM:SSF54768 |
| UniParc:UPI000294F119 | RefSeq:XP_006338046.1 | InterPro:dsRBD_dom | : | : | : |
Description
DsRNA-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400009356]
Coordinates
chr4:+:65077103..65082971
Molecular Weight (calculated)
43094.5 Da
IEP (calculated)
5.107
GRAVY (calculated)
-0.347
Length
406 amino acids
Sequence
(BLAST)
(BLAST)
001: MANNESIRSV TSCYVFKSRL QEYAQKVGLP TPVYETIKEG PSHEPTFTST VIVDNVRYDS LPGFYNRKAA EQSAAEVALM SLGNTGSMEN LSQPVHETGL
101: CKNLLQEYAQ KMNFAIPQYE CERYDSESKI ISFSCTVDVG GMKYIGAAAR TKKEAEIKAA RTALLAVQSS GFAPNYSSYT VVPMKKVTDL AISNQESAAA
201: LKPKKNRFKK KQTRNVSDAS YRVRTKNTGD SEVQMVNQAK PEMHENAAVM TQGTGSGPAP FAGTMGDLVP SNNLSSDYGT SNLGINSQCG GGVTTEGNAV
301: IGVEQVTSEL APVAWNDNLH VQDLPLLHEN AAVMTQGTGS GPAPFADTMG DLVPSNNCGS DFGTSNLGIN SQCGGGVTTE GNAGIGVEQV TSEVAPVACN
401: DNLHVL
101: CKNLLQEYAQ KMNFAIPQYE CERYDSESKI ISFSCTVDVG GMKYIGAAAR TKKEAEIKAA RTALLAVQSS GFAPNYSSYT VVPMKKVTDL AISNQESAAA
201: LKPKKNRFKK KQTRNVSDAS YRVRTKNTGD SEVQMVNQAK PEMHENAAVM TQGTGSGPAP FAGTMGDLVP SNNLSSDYGT SNLGINSQCG GGVTTEGNAV
301: IGVEQVTSEL APVAWNDNLH VQDLPLLHEN AAVMTQGTGS GPAPFADTMG DLVPSNNCGS DFGTSNLGIN SQCGGGVTTE GNAGIGVEQV TSEVAPVACN
401: DNLHVL
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.