Factsheet for PGSC0003DMT400020800

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400014123
PGSC0003DMT400018569
PGSC0003DMT400034833
PGSC0003DMT400042062
PGSC0003DMT400046278
PGSC0003DMT400054299
PGSC0003DMT400058435
PGSC0003DMT400070437
PGSC0003DMT400097662

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	PGSC0003DMT400014123	AT2G41090.1	17360592
AT2G28380.1	PGSC0003DMT400018569	AT2G41090.1	17360592
AT2G28380.1	PGSC0003DMT400046278	AT2G41090.1	17360592
AT2G28380.1	PGSC0003DMT400054299	AT2G41090.1	17360592
AT2G28380.1	PGSC0003DMT400058435	AT2G41090.1	17360592
AT2G28380.1	PGSC0003DMT400070437	AT2G41090.1	17360592
AT2G28380.1	PGSC0003DMT400097662	AT2G41090.1	17360592
AT2G28380.1	PGSC0003DMT400014123	AT2G41100.1	17360592
AT2G28380.1	PGSC0003DMT400018569	AT2G41100.1	17360592
AT2G28380.1	PGSC0003DMT400046278	AT2G41100.1	17360592
AT2G28380.1	PGSC0003DMT400054299	AT2G41100.1	17360592
AT2G28380.1	PGSC0003DMT400058435	AT2G41100.1	17360592
AT2G28380.1	PGSC0003DMT400070437	AT2G41100.1	17360592
AT2G28380.1	PGSC0003DMT400097662	AT2G41100.1	17360592
AT2G28380.1	PGSC0003DMT400034833	AT4G14640.1	17360592
AT2G28380.1	PGSC0003DMT400042062	AT4G14640.1	17360592
AT2G28380.1	PGSC0003DMT400014123	AT5G21274.1	17360592
AT2G28380.1	PGSC0003DMT400018569	AT5G21274.1	17360592
AT2G28380.1	PGSC0003DMT400046278	AT5G21274.1	17360592
AT2G28380.1	PGSC0003DMT400054299	AT5G21274.1	17360592
AT2G28380.1	PGSC0003DMT400058435	AT5G21274.1	17360592
AT2G28380.1	PGSC0003DMT400070437	AT5G21274.1	17360592
AT2G28380.1	PGSC0003DMT400097662	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g069460.1.1	Tomato	nucleus	95.35	94.2
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	31.54	83.23
KRG90046	Soybean	nucleus	16.87	76.67
KRH58007	Soybean	nucleus	16.14	73.33
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	65.53	64.89
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	63.81	63.5
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	60.39	62.85
KRH25014	Soybean	cytosol, nucleus, plastid	61.61	62.84
KRH29911	Soybean	cytosol, nucleus, plastid	61.86	61.56
AT2G28380.1	Thale cress	cytosol	61.37	57.83
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	60.64	57.67
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	60.64	57.67
CDY15737	Canola	cytosol	59.66	56.35
Bra035704.1-P	Field mustard	nucleus	59.66	56.35
CDY30490	Canola	nucleus	59.66	56.22
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	59.17	55.89
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	58.44	52.99
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	56.72	52.37
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	59.41	51.7
PGSC0003DMT400060309	Potato	cytosol, nucleus, plastid	59.41	48.02
Zm00001d032679_P001	Maize	nucleus	55.75	44.27
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	55.26	43.46
Os10t0480500-01	Rice	cytosol, nucleus, plastid	54.52	43.39
KXG38314	Sorghum	mitochondrion, nucleus	55.75	42.22
TraesCS1B01G174000.1	Wheat	nucleus	54.28	42.13
HORVU1Hr1G041820.1	Barley	nucleus	54.03	41.94
TraesCS1A01G157700.3	Wheat	nucleus	53.79	41.83
TraesCS1D01G155300.1	Wheat	nucleus	54.28	41.73
PGSC0003DMT400014406	Potato	nucleus	11.98	22.69
PGSC0003DMT400022469	Potato	nucleus	16.87	21.3
PGSC0003DMT400088113	Potato	nucleus	8.8	20.93
PGSC0003DMT400085647	Potato	cytosol, nucleus	12.22	18.87
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	15.65	15.76

Protein Annotations

EntrezGene:102588953	Gene3D:3.30.160.20	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0035196	GO:GO:0040029	GO:GO:0070919	InterPro:IPR014720
UniProt:M1AE38	PFAM:PF00035	EnsemblPlantsGene:PGSC0003DMG400008053	PGSC:PGSC0003DMG400008053	EnsemblPlants:PGSC0003DMT400020800	PFscan:PS50137
PANTHER:PTHR10910	PANTHER:PTHR10910:SF141	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000294D742	RefSeq:XP_006340194.1
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

DsRNA-binding protein 2 [Source:PGSC_GENE;Acc:PGSC0003DMG400008053]

Coordinates

chr11:-:41636813..41643864

Molecular Weight (calculated)

44611.1 Da

IEP (calculated)

9.855

GRAVY (calculated)

-0.497

Length

409 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY VCIREGPDHA PRFKAVVNFN GESFESPHYC STLRQAEHAA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPQYTTYR SGLGHQPVFT GTVELAGITF TGEPAKNKKQ AEKNAALAAW SSLKQLAQQD ASLSSELENN DEQEQIRIAR ALLNYRLKEQ LEMAKSGKVP
201: IPFQKKFPMP SPRPSSPQRP AVTTSKILPL ICPKTVNRYR SSSTTINDSH SSLSQPLPQS QTSSSEGRTV STRISPAPYM PVRQYTRTPY HGIAPPVTIR
301: TAVPVFSAPP RPQPTGCPAQ MMQARPVRVA PPVCIRQAIP VYAAPPVKKE TVAHATTTLS RPSAQPEETV ARATTAPSRP LAQPKETGTN AGTEVDESTA
401: MKCLEELSL

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.