Factsheet for HORVU1Hr1G041820.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU0Hr1G001280.1
HORVU2Hr1G016740.4
HORVU3Hr1G038010.1
HORVU3Hr1G079210.4
HORVU4Hr1G026290.3
HORVU5Hr1G014060.1
HORVU5Hr1G014070.2
HORVU5Hr1G044710.4

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	HORVU0Hr1G001280.1	AT2G41090.1	17360592
AT2G28380.1	HORVU2Hr1G016740.4	AT2G41090.1	17360592
AT2G28380.1	HORVU3Hr1G038010.1	AT2G41090.1	17360592
AT2G28380.1	HORVU3Hr1G079210.4	AT2G41090.1	17360592
AT2G28380.1	HORVU4Hr1G026290.3	AT2G41090.1	17360592
AT2G28380.1	HORVU5Hr1G014060.1	AT2G41090.1	17360592
AT2G28380.1	HORVU5Hr1G014070.2	AT2G41090.1	17360592
AT2G28380.1	HORVU5Hr1G044710.4	AT2G41090.1	17360592
AT2G28380.1	HORVU0Hr1G001280.1	AT2G41100.1	17360592
AT2G28380.1	HORVU2Hr1G016740.4	AT2G41100.1	17360592
AT2G28380.1	HORVU3Hr1G038010.1	AT2G41100.1	17360592
AT2G28380.1	HORVU3Hr1G079210.4	AT2G41100.1	17360592
AT2G28380.1	HORVU4Hr1G026290.3	AT2G41100.1	17360592
AT2G28380.1	HORVU5Hr1G014060.1	AT2G41100.1	17360592
AT2G28380.1	HORVU5Hr1G014070.2	AT2G41100.1	17360592
AT2G28380.1	HORVU5Hr1G044710.4	AT2G41100.1	17360592
AT2G28380.1	HORVU0Hr1G001280.1	AT5G21274.1	17360592
AT2G28380.1	HORVU2Hr1G016740.4	AT5G21274.1	17360592
AT2G28380.1	HORVU3Hr1G038010.1	AT5G21274.1	17360592
AT2G28380.1	HORVU3Hr1G079210.4	AT5G21274.1	17360592
AT2G28380.1	HORVU4Hr1G026290.3	AT5G21274.1	17360592
AT2G28380.1	HORVU5Hr1G014060.1	AT5G21274.1	17360592
AT2G28380.1	HORVU5Hr1G014070.2	AT5G21274.1	17360592
AT2G28380.1	HORVU5Hr1G044710.4	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G155300.1	Wheat	nucleus	93.55	92.67
TraesCS1B01G174000.1	Wheat	nucleus	91.84	91.84
TraesCS1A01G157700.3	Wheat	nucleus	90.7	90.87
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	22.2	75.48
Os10t0480500-01	Rice	cytosol, nucleus, plastid	71.73	73.54
Zm00001d032679_P001	Maize	nucleus	70.4	72.04
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	69.45	70.38
KXG38314	Sorghum	mitochondrion, nucleus	72.11	70.37
KRG90046	Soybean	nucleus	11.95	70.0
KRH58007	Soybean	nucleus	11.2	65.56
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	44.78	57.14
KRH25014	Soybean	cytosol, nucleus, plastid	43.07	56.61
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	46.87	55.76
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	47.63	55.65
KRH29911	Soybean	cytosol, nucleus, plastid	43.26	55.47
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	40.42	54.2
PGSC0003DMT400020800	Potato	nucleus	41.94	54.03
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	44.02	53.95
Solyc11g069460.1.1	Tomato	nucleus	42.31	53.86
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	41.94	53.77
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	43.83	53.72
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	47.63	53.4
Bra035704.1-P	Field mustard	nucleus	43.64	53.12
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	43.45	52.89
CDY30490	Canola	nucleus	43.45	52.77
CDY15737	Canola	cytosol	42.69	51.96
AT2G28380.1	Thale cress	cytosol	42.69	51.84
PGSC0003DMT400060309	Potato	cytosol, nucleus, plastid	41.37	43.08
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	41.56	39.6
HORVU1Hr1G021530.1	Barley	nucleus	30.74	27.93
HORVU5Hr1G076910.7	Barley	nucleus	18.22	23.02
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	14.23	18.38
HORVU3Hr1G075340.1	Barley	mitochondrion	14.04	12.96
HORVU5Hr1G047100.5	Barley	nucleus	13.47	12.39

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A287FA31	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0019538	GO:GO:0035196	GO:GO:0040029	GO:GO:0070919	EnsemblPlantsGene:HORVU1Hr1G041820
EnsemblPlants:HORVU1Hr1G041820.1	InterPro:IPR014720	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910	PANTHER:PTHR10910:SF141
SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000B481B5A	InterPro:dsRBD_dom	SEG:seg	:

Description

No Description!

Coordinates

chrchr1H:-:300366452..300372812

Molecular Weight (calculated)

56850.5 Da

IEP (calculated)

9.145

GRAVY (calculated)

-0.506

Length

527 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPAY TCLREGPDHA PRFKAAVIFN GEQFESPGFF TTLRQAEHAA AEVALAALAR RGPSYSLAAR ILDETGVYKN LLQEVAQRVG
101: APLPSYTTER SGLGHLPVFT CTVELAGITF TGDHAKNKKQ AEKNAASAAW SSLKQLAREE ANSTNEPENN DEQEQIRIAR ALLNYRLKEK MAMANNPHAS
201: PFPKKFPMQP ERKPCFGQSS QSSYSKILPL FRPKSSSRSR PESPAAADGA SPSPFWPIES SNSRSRFPAA EAAPYVPVGH YHMSCHSMAP PVTVRSSIPV
301: FSAPPLPPPS GRTQQLPPLL SNPPSVRMAS PVRIRPASPH FAPSGPAQRP RPVMSVQMKD VQHKPIRESM PSAIPVQVKN AQQRTTKESP SSAMPVQVND
401: RHHQMFKGSP SSMMPIQMKN VQPQPPKEPL SEGKDAAPAV PLPAKMEAPA QVKEASEVVT SEVVPCPAAG SIAAATSTSI STSDCSTADP ASQSGADDDA
501: AKGEEAQKDV LEAEAALEGI IKLLEIK

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.