Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G091200.2 | Wheat | nucleus | 91.03 | 92.63 |
| TraesCS1B01G119000.1 | Wheat | nucleus | 91.21 | 91.52 |
| TraesCS1D01G099700.1 | Wheat | nucleus | 89.83 | 91.24 |
| Os05t0150400-01 | Rice | cytosol, nucleus | 67.76 | 65.17 |
| KXG21311 | Sorghum | nucleus | 63.79 | 64.57 |
| Zm00001d024861_P007 | Maize | nucleus | 54.83 | 61.87 |
| KRH68665 | Soybean | nucleus | 34.66 | 37.29 |
| GSMUA_Achr5P00420_001 | Banana | nucleus | 36.03 | 36.41 |
| KRG96921 | Soybean | nucleus | 33.1 | 35.69 |
| VIT_14s0030g01280.t01 | Wine grape | nucleus | 34.83 | 35.07 |
| HORVU1Hr1G041820.1 | Barley | nucleus | 27.93 | 30.74 |
| HORVU5Hr1G076910.7 | Barley | nucleus | 17.24 | 23.98 |
| VIT_05s0020g01850.t01 | Wine grape | nucleus | 34.14 | 23.97 |
| HORVU4Hr1G024480.3 | Barley | cytosol, nucleus | 13.28 | 18.87 |
| HORVU3Hr1G075340.1 | Barley | mitochondrion | 15.86 | 16.11 |
| HORVU5Hr1G047100.5 | Barley | nucleus | 14.66 | 14.83 |
Protein Annotations
| EMBL:AK364512 | EnsemblPlants:HORVU1Hr1G021530.1 | EnsemblPlantsGene:HORVU1Hr1G021530 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003723 | GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF104 |
| PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI00020066D1 |
| UniProt:F2DKU4 | MapMan:35.1 | : | : | : | : |
Description
Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2DKU4]
Coordinates
chrchr1H:+:86411786..86416434
Molecular Weight (calculated)
63789.6 Da
IEP (calculated)
9.316
GRAVY (calculated)
-0.756
Length
580 amino acids
Sequence
(BLAST)
(BLAST)
001: MFKNQLQELA QRSCFNLPSY ACIREGPDHA PRFKATVTFN GESFESPGFY STLRQAEHAA AEVALNELSK RGPSSSLAAK VLDETGIYKN LLQETAHRAG
101: LKLPMYTTIR SGPGHTPTFT CTVELAGRIF TGSPGKTKKQ AQKNAAMAAW SELKQLPLVG EGEAASSSSP SDHDEEKEQA TVARSLENLN QKNEGKTSYQ
201: KEKQQSNNRP QSQRSYPKPQ RSYPKPYVSF YGSHLQNQMY PNVAPEQAVY HMWNQVQATQ QKPPFPMVQT MGNTRFQPPP TMLSMYPPPP RRQFAVPASQ
301: DALALLPCFP ETPPVLPRYF SPYPATYVPR SPLPVTVHTV HRERQGYTEI VELHDAAVLS GYTALDSSST PENVGPSQVQ LWPENGKEVY TESSAASVEE
401: NKAPQTLSSS TAHPPSQKSE PNQDDEESKK PAEQTPKPSL SRVASSVVQR PVQRQGYPSP VQHGKPTHRS NLPFSRATSP ELWSLDMQAP ARYGSATPMS
501: SSGLLYQQRP PWLAAPVTVR TSIPVCSARP NAASNSSPGE AARARPAVQI LSREDPEAHR NTRHAGDVST ASSELNKLHM
101: LKLPMYTTIR SGPGHTPTFT CTVELAGRIF TGSPGKTKKQ AQKNAAMAAW SELKQLPLVG EGEAASSSSP SDHDEEKEQA TVARSLENLN QKNEGKTSYQ
201: KEKQQSNNRP QSQRSYPKPQ RSYPKPYVSF YGSHLQNQMY PNVAPEQAVY HMWNQVQATQ QKPPFPMVQT MGNTRFQPPP TMLSMYPPPP RRQFAVPASQ
301: DALALLPCFP ETPPVLPRYF SPYPATYVPR SPLPVTVHTV HRERQGYTEI VELHDAAVLS GYTALDSSST PENVGPSQVQ LWPENGKEVY TESSAASVEE
401: NKAPQTLSSS TAHPPSQKSE PNQDDEESKK PAEQTPKPSL SRVASSVVQR PVQRQGYPSP VQHGKPTHRS NLPFSRATSP ELWSLDMQAP ARYGSATPMS
501: SSGLLYQQRP PWLAAPVTVR TSIPVCSARP NAASNSSPGE AARARPAVQI LSREDPEAHR NTRHAGDVST ASSELNKLHM
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHAA AEVSLNVLSS RVPSKSLTAK ILDETGIYKN LLQETAHRAG
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
101: LDLPMYTSVR SGSCHFPGFS CTVELAGMTF TGESAKTKKQ AEKNAAIAAW SSLKKMSSLD SQDEEKEQEA VARVLSRFKP KEVRRRETTN QWRRRTSQQD
201: SNKDLLIERL RWINLLTNQA SSSSSTSTPN QHKNSSFISL IPPPPPPKSS KILPFIQQYK DRSSQEAKTE TATEMINSKA KVNETSTRLS KQMPFSDMNR
301: YNFVGGCSVN PYSLAPAVQM RSVIPVFAAP PPKPNPNLNP SSLSSSVNEF TSSNNSCSVL NTPGLGGQEK KNLTREMIKL GSESRILDQT HDS
Arabidopsis Description
DRB5Double-stranded RNA-binding protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8GY79]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.