CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 2
nucleus 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH68665	Soybean	nucleus	92.01	91.84
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	19.89	69.03
KRG90046	Soybean	nucleus	11.15	66.67
KRH58007	Soybean	nucleus	10.97	65.56
VIT_14s0030g01280.t01	Wine grape	nucleus	52.97	49.48
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	32.34	42.34
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	30.67	41.98
KRH25014	Soybean	cytosol, nucleus, plastid	31.04	41.65
KRH29911	Soybean	cytosol, nucleus, plastid	31.6	41.36
GSMUA_Achr5P00420_001	Banana	nucleus	39.96	37.46
Zm00001d024861_P007	Maize	nucleus	34.76	36.38
Os05t0150400-01	Rice	cytosol, nucleus	39.03	34.83
KXG21311	Sorghum	nucleus	36.99	34.73
TraesCS1A01G091200.2	Wheat	nucleus	35.69	33.68
TraesCS1D01G099700.1	Wheat	nucleus	35.32	33.27
HORVU1Hr1G021530.1	Barley	nucleus	35.69	33.1
TraesCS1B01G119000.1	Wheat	nucleus	35.5	33.05
KRH63090	Soybean	nucleus	8.74	30.13
KRH62980	Soybean	nucleus	9.85	26.63
KRH46125	Soybean	mitochondrion, nucleus	13.57	20.74
KRG98822	Soybean	nucleus	9.67	19.19
KRH62246	Soybean	nucleus	12.27	18.38
KRH52961	Soybean	nucleus	12.27	18.18
KRH15123	Soybean	nucleus	15.24	17.86
KRH30959	Soybean	mitochondrion	8.55	16.67
KRH01275	Soybean	nucleus	10.22	16.47
KRH73012	Soybean	nucleus	8.36	15.41
KRH57881	Soybean	nucleus	14.31	15.28

Protein Annotations

EntrezGene:100820350	Gene3D:3.30.160.20	MapMan:35.1	EMBL:ACUP02012169	EnsemblPlantsGene:GLYMA_19G241100	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	UniProt:K7N019	ProteinID:KRG96920.1
EnsemblPlants:KRG96921	ProteinID:KRG96921	ProteinID:KRG96921.1	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR10910
PANTHER:PTHR10910:SF142	SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI000233EA20	InterPro:dsRBD_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr19:-:48904054..48908674

Molecular Weight (calculated)

58956.4 Da

IEP (calculated)

8.487

GRAVY (calculated)

-0.517

Length

538 amino acids

Sequence
(BLAST)

001: MYKNRLQELA QRSCFNLPAY SCIREGPDHA PRFKATVNFN GETFESPTFC STLRQAEHAA AEVALNTIAK RGPSGALAAR VLDETGVYKN LLQETAHRAG
101: LNLPVYTTIR SGPGHGPNFS CSVEIAGMHF TGDPSRTKKQ AQKNAAMAAW SALRKLSEHH LSSSTSSSFS RESKANEEQE QVIIAGVLAS LHPSGSKNFS
201: TSDSQLGWQK STTTSLVSTQ STADLYPMQW HCGISSFSPE VALYQTWQQQ QIMQQQNRLL ELTIQPIIPS TPEIYPLMQS VFQPDHCLYF PARELASVPL
301: GPKLSIATSN PSFYSSNQIV PELNTGRSTL TIREIQEEKT EDPPVCTFSN ETRVLTPAPE DEIQKHGGSG GRSRNAELVG EHCEKTECDS HWSTRSVIRP
401: VNTELQNPSS IDSSVLRAHS QASSNRSFRP PAAASSSIVR TMCPTSSVGS RPQHAASRLR TGTPRSPGIP TSERFGMIRA PTPLFMAPAV RIRSVVPVCS
501: APPRRSMAEV SQSKEKEDLK PEDKEVSRTS SELGHLRI

Best Arabidopsis Sequence Match ( AT3G26932.2 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.