CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG89812
KRG94975
KRH18664
KRH31638
KRH69070

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	KRG89812	AT2G41090.1	17360592
AT2G28380.1	KRG94975	AT2G41090.1	17360592
AT2G28380.1	KRH18664	AT2G41090.1	17360592
AT2G28380.1	KRG89812	AT2G41100.1	17360592
AT2G28380.1	KRG94975	AT2G41100.1	17360592
AT2G28380.1	KRH18664	AT2G41100.1	17360592
AT2G28380.1	KRH31638	AT4G14640.1	17360592
AT2G28380.1	KRH69070	AT4G14640.1	17360592
AT2G28380.1	KRG89812	AT5G21274.1	17360592
AT2G28380.1	KRG94975	AT5G21274.1	17360592
AT2G28380.1	KRH18664	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	88.81	92.88
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	34.06	90.32
KRG90046	Soybean	nucleus	18.0	82.22
KRH58007	Soybean	nucleus	17.52	80.0
KRH25014	Soybean	cytosol, nucleus, plastid	73.97	75.81
KRH29911	Soybean	cytosol, nucleus, plastid	75.67	75.67
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	69.59	69.25
PGSC0003DMT400020800	Potato	nucleus	63.5	63.81
Solyc11g069460.1.1	Tomato	nucleus	63.5	63.04
AT2G28380.1	Thale cress	cytosol	63.5	60.14
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	61.31	58.6
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	61.07	58.37
Bra035704.1-P	Field mustard	nucleus	61.31	58.2
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	61.07	57.97
CDY30490	Canola	nucleus	61.07	57.83
CDY15737	Canola	cytosol	59.85	56.81
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	59.37	55.08
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	59.85	54.55
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	62.29	54.47
Os10t0480500-01	Rice	cytosol, nucleus, plastid	54.01	43.19
Zm00001d032679_P001	Maize	nucleus	54.01	43.11
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	53.28	42.12
HORVU1Hr1G041820.1	Barley	nucleus	53.77	41.94
TraesCS1B01G174000.1	Wheat	nucleus	52.8	41.18
KXG38314	Sorghum	mitochondrion, nucleus	53.77	40.93
TraesCS1A01G157700.3	Wheat	nucleus	52.31	40.87
TraesCS1D01G155300.1	Wheat	nucleus	52.8	40.79
KRH68665	Soybean	nucleus	43.31	33.02
KRG96921	Soybean	nucleus	42.34	32.34
KRH63090	Soybean	nucleus	10.46	27.56
KRH62980	Soybean	nucleus	11.44	23.62
KRH46125	Soybean	mitochondrion, nucleus	16.3	19.03
KRH52961	Soybean	nucleus	15.57	17.63
KRH62246	Soybean	nucleus	15.33	17.55
KRG98822	Soybean	nucleus	11.44	17.34
KRH57881	Soybean	nucleus	20.68	16.87
KRH01275	Soybean	nucleus	12.41	15.27
KRH30959	Soybean	mitochondrion	10.22	15.22
KRH15123	Soybean	nucleus	16.79	15.03
KRH73012	Soybean	nucleus	9.73	13.7

Protein Annotations

EMBL:ACUP02007712	EnsemblPlants:KRH26403	EnsemblPlantsGene:GLYMA_12G172100	EntrezGene:100815739	Gene3D:3.30.160.20	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910
PANTHER:PTHR10910:SF141	PFAM:PF00035	PFscan:PS50137	ProteinID:KRH26403	ProteinID:KRH26403.1	SEG:seg
SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0001CAAF77	UniProt:I1LTH4	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr12:-:32818930..32821616

Molecular Weight (calculated)

44770.7 Da

IEP (calculated)

10.157

GRAVY (calculated)

-0.492

Length

411 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPSY ACIREGPDHA PRFKATVNFN GEIFESPHYC STLRQAEHSA AEVALNSLSH RGPSHSLAAK ILDETGVYKN LLQEIAQRVG
101: APLPHYTTYR SGLGHLPVFT GIVELAGITF TGEPAKNKKQ AEKNAAMAAW SALKQLAKET ASSSTEPENN DELEQITIAR ALLNYRLKEK MAMSNPNAPV
201: SFHKRFQIQN PRPISSQPPP ATSSKILPLI CQKTAPRSKP SLATTANESP RSRHPQAAMT SDNSTLPPQS CSLESRATRP LKFRAAGAAP YVPIRQMRPS
301: CQRIAPPVTI RTVVPAFATP PCPPPASVPH PAIRAPPVRV APPVTIRQAV PVYAAPPSKK NEPAAVQQKD LPTAGASGQQ DKLPVKIQEM DKAENIPPES
401: ETMRSLEQLR I

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.