CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES01631
EES09201
EES16322
KXG37587
KXG37588
OQU78227

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G28380.1	EES01631	AT2G41090.1	17360592
AT2G28380.1	EES09201	AT2G41090.1	17360592
AT2G28380.1	EES16322	AT2G41090.1	17360592
AT2G28380.1	OQU78227	AT2G41090.1	17360592
AT2G28380.1	EES01631	AT2G41100.1	17360592
AT2G28380.1	EES09201	AT2G41100.1	17360592
AT2G28380.1	EES16322	AT2G41100.1	17360592
AT2G28380.1	OQU78227	AT2G41100.1	17360592
AT2G28380.1	KXG37587	AT4G14640.1	17360592
AT2G28380.1	KXG37588	AT4G14640.1	17360592
AT2G28380.1	EES01631	AT5G21274.1	17360592
AT2G28380.1	EES09201	AT5G21274.1	17360592
AT2G28380.1	EES16322	AT5G21274.1	17360592
AT2G28380.1	OQU78227	AT5G21274.1	17360592

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d032679_P001	Maize	nucleus	87.59	91.84
Zm00001d014011_P001	Maize	mitochondrion, nucleus, plastid	80.74	83.85
KRH55141	Soybean	cytosol, mitochondrion, nucleus, plastid	22.04	76.77
Os10t0480500-01	Rice	cytosol, nucleus, plastid	71.3	74.9
HORVU1Hr1G041820.1	Barley	nucleus	70.37	72.11
TraesCS1D01G155300.1	Wheat	nucleus	70.56	71.62
TraesCS1B01G174000.1	Wheat	nucleus	69.44	71.16
KRG90046	Soybean	nucleus	11.85	71.11
TraesCS1A01G157700.3	Wheat	nucleus	69.07	70.91
KRH58007	Soybean	nucleus	11.11	66.67
VIT_06s0004g02810.t01	Wine grape	cytosol, nucleus, plastid	43.7	57.14
KRH25014	Soybean	cytosol, nucleus, plastid	41.85	56.36
PGSC0003DMT400020800	Potato	nucleus	42.22	55.75
KRH29911	Soybean	cytosol, nucleus, plastid	42.41	55.72
GSMUA_Achr11P...	Banana	cytosol, nucleus, plastid	45.74	54.77
KRH22885	Soybean	cytosol, mitochondrion, nucleus, plastid	39.81	54.71
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	44.44	54.18
Solyc11g069460.1.1	Tomato	nucleus	41.3	53.86
KRH26403	Soybean	cytosol, mitochondrion, nucleus, plastid	40.93	53.77
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus, plastid	45.74	52.55
Bra011953.1-P	Field mustard	cytosol, mitochondrion, nucleus, plastid	41.67	52.33
CDY04559	Canola	cytosol, mitochondrion, nucleus, plastid	41.67	52.33
AT2G28380.1	Thale cress	cytosol	42.04	52.3
Bra035704.1-P	Field mustard	nucleus	41.85	52.19
CDY30490	Canola	nucleus	41.85	52.07
CDX77176	Canola	cytosol, mitochondrion, nucleus, plastid	41.48	51.73
CDY15737	Canola	cytosol	40.74	50.81
PGSC0003DMT400060309	Potato	cytosol, nucleus, plastid	40.0	42.69
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	40.37	39.42
EES16051	Sorghum	cytosol	11.67	31.82
KXG21311	Sorghum	nucleus	29.81	28.1
EER88251	Sorghum	cytosol, mitochondrion, nucleus	11.3	25.1
OQU82704	Sorghum	cytosol, nucleus	12.96	21.28
EES14943	Sorghum	nucleus	9.81	17.79
KXG22802	Sorghum	mitochondrion	13.52	16.9
KXG33474	Sorghum	mitochondrion	15.19	16.27
EES09107	Sorghum	cytosol	7.96	11.91

Protein Annotations

Gene3D:3.30.160.20	MapMan:35.1	UniProt:A0A1B6QK73	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003725	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006139	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0035196	GO:GO:0040029	GO:GO:0070919
InterPro:IPR014720	EnsemblPlants:KXG38314	ProteinID:KXG38314	ProteinID:KXG38314.1	PFAM:PF00035	PFscan:PS50137
PANTHER:PTHR10910	PANTHER:PTHR10910:SF141	SMART:SM00358	EnsemblPlantsGene:SORBI_3001G217100	SUPFAM:SSF54768	UniParc:UPI0003C686A8
InterPro:dsRBD_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:20113318..20119175

Molecular Weight (calculated)

58431.7 Da

IEP (calculated)

10.008

GRAVY (calculated)

-0.466

Length

540 amino acids

Sequence
(BLAST)

001: MYKNQLQELA QRSCFNLPAY TCLREGPDHA PRFKAAVNFN GEQFESPGFF TTLRQAEHAA AEVALAALAR RGPSYSLAAR ILDETGVYKN LLQEVAQRVG
101: APLPLYTTER SGLGHLPVFT CTVELAGITF TGDPAKNKKQ AEKNAASAAW SALKQLVREE VNSSNEPENN DEQEQIRIAR ALLNYRLKEK MAMANYPHVS
201: PFPKKFPMQP ERKPSFGQSS QSSYSKILPL FRPKSNSRSR PESPASTDGV SQIPSRAMDS LTPSPRSRFP AAEAAPYVPV GHYRMPCHSM APSVTIRTAV
301: PVFSAPPLPS PSARPQQLPP LMSHPPPIRM ASPVRMRPSS PMFASSAAVQ GPKPVMPIQL KNVQDQSRKE TAPSAIPVQV KDVQYQPRKS SMSPVIPVSV
401: KDAQRQPLVG SLSTAIPVQM KDMQTQTPKE SLSTAIPVQM KDVQTQAPKE SLSAPIPAIR PSLVKIDLPA QGKEASASAT SEVPSSATGN NAAVECTASS
501: DALLARQSRA ADGDKDKAEA KHEAEAQAVA EAAIRQLEIN

Best Arabidopsis Sequence Match ( AT2G28380.1 )
(BLAST)

001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI

Arabidopsis Description

DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.