Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 1
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G62800.1 | EER88251 | AT3G62800.1 | 21798944 |
| AT3G62800.1 | EES16051 | AT3G62800.1 | 21798944 |
| AT3G62800.1 | KXG33474 | AT3G62800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 36.51 | 74.8 |
| Os01t0772000-01 | Rice | mitochondrion, nucleus | 46.03 | 52.61 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 16.67 | 47.73 |
| VIT_08s0056g01550.t01 | Wine grape | plastid | 15.28 | 46.39 |
| EER88251 | Sorghum | cytosol, mitochondrion, nucleus | 21.43 | 44.44 |
| EES16051 | Sorghum | cytosol | 15.67 | 39.9 |
| HORVU3Hr1G075340.1 | Barley | mitochondrion | 44.44 | 39.23 |
| TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 41.67 | 38.53 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 45.63 | 37.89 |
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 45.44 | 37.79 |
| TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 45.24 | 37.62 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 45.04 | 37.46 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 18.45 | 32.29 |
| Bra007702.1-P | Field mustard | nucleus | 19.05 | 29.09 |
| KRH57881 | Soybean | nucleus | 28.97 | 28.97 |
| CDY11449 | Canola | nucleus | 18.85 | 28.7 |
| CDX76663 | Canola | cytosol | 18.65 | 28.06 |
| AT3G62800.1 | Thale cress | nucleus | 17.66 | 25.07 |
| OQU82704 | Sorghum | cytosol, nucleus | 11.9 | 18.24 |
| EES14943 | Sorghum | nucleus | 10.52 | 17.79 |
| KXG22802 | Sorghum | mitochondrion | 14.48 | 16.9 |
| KXG21311 | Sorghum | nucleus | 17.86 | 15.71 |
| KXG38314 | Sorghum | mitochondrion, nucleus | 16.27 | 15.19 |
| EES09107 | Sorghum | cytosol | 4.56 | 6.37 |
Protein Annotations
| EnsemblPlants:KXG33474 | EnsemblPlantsGene:SORBI_3003G311500 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 | PANTHER:PTHR10910:SF114 | PFAM:PF00035 |
| PFscan:PS50137 | ProteinID:KXG33474 | ProteinID:KXG33474.1 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| UniParc:UPI00081AD5A1 | UniProt:A0A1B6Q6C4 | MapMan:35.1 | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:63972947..63981177
Molecular Weight (calculated)
54364.2 Da
IEP (calculated)
4.737
GRAVY (calculated)
-0.367
Length
504 amino acids
Sequence
(BLAST)
(BLAST)
001: MYKSRLQELC QKRRWAPPVY EPTREGPAHT PLFRATVVVN GESFSSPDEG ERSVKEACNL AAMAAFENLS ALPAEAPAPA PAPAPPPPET QLRYKNQLQE
101: YAQKRGKLLP SYRPIHGGSL RAPLFKSEVT IDGQTFESPE YCRTMKEAET AAAKVALMFL PQEAGPTQQL PLPSVSYKNL LQEFVQKEGF PLPTYDTTLD
201: VSNYSAAFIS TVEIQGATFR GEPGNTKKQA EMNAAKIAFQ HFKDRVKDSA CSTVHGGPPV QQGTKNLPAG QNIKVLEPGF SVLGVSMPTA NHGKDNDFDA
301: VNHDAGSAGS ANRLPVAATT QSLDGNTLSA KLEVNKPLLA EPSTEVDKLP LLGPSMDIEV MDSTLEVDKL SLPEQSIDIE VLKVDKLHSP EASTEAEVIH
401: SSLQVDEPLI PEPSTEVEGM DSSLEHTSVV NGQAALIAPT ITSTLSMSTA TMPVSNDSCG CYLGTNRIQV YPRHTDMVIP EGATMLPISD NQWVAVSLPY
501: SNNN
101: YAQKRGKLLP SYRPIHGGSL RAPLFKSEVT IDGQTFESPE YCRTMKEAET AAAKVALMFL PQEAGPTQQL PLPSVSYKNL LQEFVQKEGF PLPTYDTTLD
201: VSNYSAAFIS TVEIQGATFR GEPGNTKKQA EMNAAKIAFQ HFKDRVKDSA CSTVHGGPPV QQGTKNLPAG QNIKVLEPGF SVLGVSMPTA NHGKDNDFDA
301: VNHDAGSAGS ANRLPVAATT QSLDGNTLSA KLEVNKPLLA EPSTEVDKLP LLGPSMDIEV MDSTLEVDKL SLPEQSIDIE VLKVDKLHSP EASTEAEVIH
401: SSLQVDEPLI PEPSTEVEGM DSSLEHTSVV NGQAALIAPT ITSTLSMSTA TMPVSNDSCG CYLGTNRIQV YPRHTDMVIP EGATMLPISD NQWVAVSLPY
501: SNNN
001: MYKNQLQELA QRSCFNLPSY TCIREGPDHA PRFKATVNFN GEIFESPQYC STLRQAEHSA AEVALNALSN RGPSHSLAAR ILDETGVYKN LLQEIAQRVG
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
101: APLPRYTTFR SGLGHQPVFT GTVELAGITF TGDPAKNKKQ AEKNAAMAAW SSLKQLAKET SSSMPEPENI DELEQVIIAR ALINYRIKEN IGTGSSSSAP
201: VPFAKKFFMQ NLRPTSPQPS PATTSRILPF ICPKQPSRSS RSSLAATSGI DRIMAAALES RSYQRPQQRF ANPPYVPMRQ FRSQCHGMAP PVTIRTAVPV
301: FSAPPMPPPP CTNNTQLPSS VYVPSLMRTA PPVRIAPPVT IRTAVPVFAS APPVRIRTAV KPTVEAGETR ISSVQEKESI PVLPDSLEIG VEGSTITITD
401: CEKTASKETE RAEFKDSSKG EPETARERLE NLKI
Arabidopsis Description
DRB2Double-stranded RNA-binding protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SKN2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.