Factsheet for TraesCS3A01G527500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

cytosol 1
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G295400.2
TraesCS3A01G527500.1
TraesCS3B01G341600.1
TraesCS3B01G341700.4
TraesCS3B01G341800.9
TraesCS3D01G307700.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	TraesCS3A01G295400.2	AT3G62800.1	21798944
AT3G62800.1	TraesCS3A01G527500.1	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341600.1	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341700.4	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341800.9	AT3G62800.1	21798944
AT3G62800.1	TraesCS3D01G307700.5	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d022648_P001	Maize	mitochondrion, nucleus	44.32	31.71
VIT_08s0056g01550.t01	Wine grape	plastid	22.16	23.49
Os01t0772000-01	Rice	mitochondrion, nucleus	44.89	17.91
KXG33474	Sorghum	mitochondrion	47.73	16.67
HORVU3Hr1G075340.1	Barley	mitochondrion	53.98	16.64
TraesCS3A01G295400.2	Wheat	nucleus	52.84	15.32
KRH57881	Soybean	nucleus	36.93	12.9
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	20.45	12.5
Bra007702.1-P	Field mustard	nucleus	19.89	10.61
CDY11449	Canola	nucleus	19.89	10.57
TraesCS6A01G172500.1	Wheat	cytosol	17.05	10.56
CDX76663	Canola	cytosol	19.89	10.45
AT3G62800.1	Thale cress	nucleus	19.32	9.58
TraesCS4A01G180400.1	Wheat	cytosol	19.89	8.6
TraesCS5A01G290100.2	Wheat	nucleus	17.61	8.54
TraesCS1A01G157700.3	Wheat	nucleus	18.18	6.08
TraesCS1A01G091200.2	Wheat	nucleus	18.75	5.79
TraesCS5A01G149400.2	Wheat	mitochondrion	17.61	5.58
TraesCS5A01G149300.1	Wheat	cytosol, plastid	6.82	3.49

Protein Annotations

EnsemblPlants:TraesCS3A01G527500.1	EnsemblPlantsGene:TraesCS3A01G527500	Gene3D:3.30.160.20	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910
PANTHER:PTHR10910:SF114	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
TIGR:cd00048	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3A:-:741872923..741874333

Molecular Weight (calculated)

19658.7 Da

IEP (calculated)

10.383

GRAVY (calculated)

-0.541

Length

176 amino acids

Sequence
(BLAST)

001: MFTSKLHNLC QKLRWPAPAN ADRREGPDHA PTFHATVAVG PAVFRSPAAP RPRTRKQVRD LAARAAFEDL AGWEAPPQLL PETQVPYKCQ LQDYAQKRQK
101: DLPLYHTIQS GPLHLPMFRS TVTIDGRTFE SPKDYNTKKK AESAAAAAAL MALADQAKPL EKMLLCFTGQ RLGAWR

Best Arabidopsis Sequence Match ( AT3G26932.1 )
(BLAST)

001: MYKNQLQELA QRSCFSLPSY TCTREGPDHA PRFKASVNFN GEIFESPTYC STLRQAEHSA AEVALSALSS KGPSKSLTAR VLDETGIYKN LLQETAHRAG
101: LDLPVYTSVR SGPGHIPTFS CTVELAGMSF NGESAKTKKQ AEKNAAIAAW FSLRKMPRLD PLRGEEKEQE IVARVLSRFR PKEVKRREPN QSRRRTVIRT
201: IRQNTTTTTT TTGDLLCEKL RSINLYTNEA SSSSPPPQRF WPSRTNLTQE QSKVKSLLEK CQEYAEKKQS LDDPKPEMRI KTSSPSPLSS SVERNCYSKL
301: LPFPSFVLNH QKLAPAVHIR SVIPVCSAPP PKPNPNPNSS PFITRELGNG SQEKKSLPN

Arabidopsis Description

DRB3Double-stranded RNA-binding protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJF5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.