Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4D01G132400.1 | Wheat | cytosol | 89.43 | 89.22 |
| HORVU4Hr1G024480.3 | Barley | cytosol, nucleus | 80.34 | 80.15 |
| OQU82704 | Sorghum | cytosol, nucleus | 41.52 | 51.37 |
| Os05t0307400-01 | Rice | cytosol | 51.84 | 48.28 |
| Os11t0109900-01 | Rice | cytosol | 55.04 | 47.36 |
| KXG22802 | Sorghum | mitochondrion | 47.42 | 44.68 |
| Zm00001d005065_P002 | Maize | cytosol | 47.17 | 44.24 |
| CDX93488 | Canola | plastid | 27.03 | 40.0 |
| Bra019999.1-P | Field mustard | plastid | 26.78 | 39.78 |
| CDY20678 | Canola | cytosol | 26.78 | 39.35 |
| Bra030793.1-P | Field mustard | cytosol | 26.78 | 39.21 |
| TraesCS5A01G149400.2 | Wheat | mitochondrion | 53.56 | 39.21 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 26.54 | 38.16 |
| GSMUA_Achr11P... | Banana | nucleus | 34.4 | 37.43 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 26.78 | 33.96 |
| KRH62246 | Soybean | nucleus | 28.75 | 32.59 |
| KRH52961 | Soybean | nucleus | 28.75 | 32.23 |
| VIT_18s0001g07670.t01 | Wine grape | nucleus | 31.2 | 31.75 |
| GSMUA_Achr8P16450_001 | Banana | endoplasmic reticulum, golgi, vacuole | 27.27 | 30.83 |
| PGSC0003DMT400024215 | Potato | cytosol, nucleus, plastid | 28.75 | 28.82 |
| AT1G09700.1 | Thale cress | plastid | 28.5 | 27.68 |
| Solyc04g076420.2.1 | Tomato | cytosol, nucleus, plastid | 28.99 | 27.25 |
| TraesCS6A01G172500.1 | Wheat | cytosol | 16.22 | 23.24 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 8.6 | 19.89 |
| TraesCS5A01G290100.2 | Wheat | nucleus | 16.22 | 18.18 |
| Os12t0109900-02 | Rice | cytosol | 16.95 | 14.94 |
| TraesCS1A01G157700.3 | Wheat | nucleus | 18.92 | 14.64 |
| TraesCS1A01G091200.2 | Wheat | nucleus | 19.16 | 13.68 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 14.99 | 10.05 |
| TraesCS5A01G149300.1 | Wheat | cytosol, plastid | 7.86 | 9.3 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G180400.1 | EnsemblPlantsGene:TraesCS4A01G180400 | Gene3D:3.30.160.20 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003725 | GO:GO:0005488 | InterPro:DRB | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR11207 |
| PANTHER:PTHR11207:SF1 | PFAM:PF00035 | PFscan:PS50137 | SEG:seg | SMART:SM00358 | SUPFAM:SSF54768 |
| TIGR:cd00048 | MapMan:16.10.2.1.2 | : | : | : | : |
Description
No Description!
Coordinates
chr4A:-:454602810..454605017
Molecular Weight (calculated)
44602.6 Da
IEP (calculated)
9.594
GRAVY (calculated)
-0.604
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAAPAPNA SGIRPVKCDA FKSWLQEYAQ KLGVAAPEYH TLKEGPCHEP IFKSAVLIDG AKFDSLPGFF TRKAAEQSAA EVALMEIVES IPTIGRIPAA
101: LETGLCKNLL QEYAQKMNYI PSYSLTRQAS GIAPFTCTVE IGGIQYIGPA ARSKKEAEIK GARTALLATQ GQLEGRGSGA TKHIVVPGKR QVKETAKKPI
201: EIPKPLEVKK GGFKKKWNKR KFMKRNRQAV DVEKNEGKMA GDVINPVSGC IQQSTQEPSS DTVMLKDDEE PSKEARRVVQ EPGSDVVMLQ PSKEARRAEQ
301: ESGIAVLKPD ELDRRVEHVQ GSDIVMLPPD HETRRVKHVP GSDTAMLQRT NKARSVEQEP PRDSGMARSN KEAGCINQEL LGETATPHNV RKARTMKHDS
401: QHQCSLM
101: LETGLCKNLL QEYAQKMNYI PSYSLTRQAS GIAPFTCTVE IGGIQYIGPA ARSKKEAEIK GARTALLATQ GQLEGRGSGA TKHIVVPGKR QVKETAKKPI
201: EIPKPLEVKK GGFKKKWNKR KFMKRNRQAV DVEKNEGKMA GDVINPVSGC IQQSTQEPSS DTVMLKDDEE PSKEARRVVQ EPGSDVVMLQ PSKEARRAEQ
301: ESGIAVLKPD ELDRRVEHVQ GSDIVMLPPD HETRRVKHVP GSDTAMLQRT NKARSVEQEP PRDSGMARSN KEAGCINQEL LGETATPHNV RKARTMKHDS
401: QHQCSLM
001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA
Arabidopsis Description
DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.