Factsheet for TraesCS3A01G295400.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G295400.2
TraesCS3A01G527500.1
TraesCS3B01G341600.1
TraesCS3B01G341700.4
TraesCS3B01G341800.9
TraesCS3D01G307700.5

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	TraesCS3A01G295400.2	AT3G62800.1	21798944
AT3G62800.1	TraesCS3A01G527500.1	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341600.1	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341700.4	AT3G62800.1	21798944
AT3G62800.1	TraesCS3B01G341800.9	AT3G62800.1	21798944
AT3G62800.1	TraesCS3D01G307700.5	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G307700.5	Wheat	mitochondrion, nucleus	95.72	95.87
TraesCS3B01G341700.4	Wheat	mitochondrion, nucleus	95.55	95.71
TraesCS3B01G341800.9	Wheat	mitochondrion, nucleus	95.22	95.38
TraesCS3B01G341600.1	Wheat	mitochondrion, nucleus	85.01	94.68
HORVU3Hr1G075340.1	Barley	mitochondrion	83.2	88.44
TraesCS3A01G527500.1	Wheat	mitochondrion, nucleus	15.32	52.84
Zm00001d022648_P001	Maize	mitochondrion, nucleus	20.1	49.59
Os01t0772000-01	Rice	mitochondrion, nucleus	34.93	48.07
KXG33474	Sorghum	mitochondrion	37.89	45.63
VIT_08s0056g01550.t01	Wine grape	plastid	10.87	39.76
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	14.17	29.86
Bra007702.1-P	Field mustard	nucleus	14.5	26.67
CDY11449	Canola	nucleus	14.17	25.98
CDX76663	Canola	cytosol	14.33	25.97
KRH57881	Soybean	nucleus	19.93	24.01
AT3G62800.1	Thale cress	nucleus	14.0	23.94
TraesCS5A01G290100.2	Wheat	nucleus	12.36	20.66
TraesCS6A01G172500.1	Wheat	cytosol	7.91	16.9
TraesCS1A01G091200.2	Wheat	nucleus	14.83	15.79
TraesCS4A01G180400.1	Wheat	cytosol	10.05	14.99
TraesCS1A01G157700.3	Wheat	nucleus	12.36	14.26
TraesCS5A01G149400.2	Wheat	mitochondrion	11.37	12.41
TraesCS5A01G149300.1	Wheat	cytosol, plastid	4.94	8.72

Protein Annotations

EnsemblPlants:TraesCS3A01G295400.2	EnsemblPlantsGene:TraesCS3A01G295400	Gene3D:3.30.160.20	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910
PANTHER:PTHR10910:SF114	PFAM:PF00035	PFscan:PS50137	SEG:seg	SMART:SM00358	SUPFAM:SSF54768
TIGR:cd00048	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:529612441..529618800

Molecular Weight (calculated)

65856.1 Da

IEP (calculated)

4.763

GRAVY (calculated)

-0.571

Length

607 amino acids

Sequence
(BLAST)

001: MFKAQLNQLC QQRRWPPPDY AHQSEGPAHS LRFRATVAVN GEVYHSPDEG GGFGTAKEAQ NLAAKAAFER LSALPPPPPP QSETQLPYKS QLQVYAQKRH
101: KDLPSYDTIR SGPPHAPLFR STVTIDGRKF ESPQDYHTTK EAEFAAARVA LMSLCQEANP SEQMPAGSAS CISLPGIQIN HKLQLQMYAQ KRGKQLPWYD
201: RIQEGPSHAP LFKSIVTIDG QTFESPQYCH TIKEAEYAAA NLALVSLAQE VSSEEQLPVR GMQYTNPRHE LAEKEGSSLP VCNTSSDNLK NSSISKSTVH
301: TQGESFQEGP GNTKKQKQMT VAAFQPSKDI GSQMQQGTET LTEQEVKTVE SDSSFPQVSM GTSDGQNDSN ATEHDSCSVG SRIDLPVADK TQSLDEPIQS
401: GSMENVKPAA PEPSIKAEVM DLTQECRSPP LVSVPPTDML NLVATSTVPV ALQSPVETIQ PVKMENDKPA IPEPSTEAEV MDVAEPSAEA EVDVPEPSIK
501: AEGMHAAEPS AEAEIDVPEP SIKAEVMNST PEHTSLPFGS MPPTNTSNLA AKATAVPVDS ARCSYSMSTN RIQIYPCRPD LKMKLPEGAT VLPFSDDKWV
601: AVSLPFP

Best Arabidopsis Sequence Match ( AT3G62800.1 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDGMKMNIAS SSLPIPHNPT NVITLNAPAA NGIKRNIAAC SSWMPQNPTN DGSETSSCVV
301: DESEKKKLIM GTGHLSIPTG QHVVCRPWNP EITLPQDAEM LFRDDKFIAY RLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.