Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G62800.1 | CDX76663 | AT3G62800.1 | 21798944 |
| AT3G62800.1 | CDY11449 | AT3G62800.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY11449 | Canola | nucleus | 91.94 | 93.05 |
| AT3G62800.1 | Thale cress | nucleus | 66.87 | 63.1 |
| VIT_08s0056g01550.t01 | Wine grape | plastid | 25.37 | 51.2 |
| Solyc01g056620.2.1 | Tomato | mitochondrion, nucleus | 32.84 | 38.19 |
| EES16051 | Sorghum | cytosol | 19.7 | 33.33 |
| EER88251 | Sorghum | cytosol, mitochondrion, nucleus | 20.0 | 27.57 |
| CDY00177 | Canola | nucleus | 25.97 | 24.72 |
| CDY12250 | Canola | nucleus | 25.37 | 24.22 |
| Zm00001d022648_P001 | Maize | mitochondrion, nucleus | 17.61 | 23.98 |
| CDY34199 | Canola | nucleus | 25.97 | 23.32 |
| CDY48959 | Canola | nucleus | 25.37 | 23.29 |
| CDX93488 | Canola | plastid | 19.1 | 23.27 |
| CDY20678 | Canola | cytosol | 19.1 | 23.1 |
| CDY28511 | Canola | nucleus | 25.97 | 23.08 |
| CDY46403 | Canola | nucleus | 25.37 | 22.55 |
| CDY30490 | Canola | nucleus | 28.96 | 22.35 |
| CDX94957 | Canola | cytosol, nucleus, plastid | 18.81 | 22.26 |
| Os01t0772000-01 | Rice | mitochondrion, nucleus | 29.25 | 22.22 |
| CDX77176 | Canola | cytosol, mitochondrion, nucleus, plastid | 28.66 | 22.17 |
| CDY04559 | Canola | cytosol, mitochondrion, nucleus, plastid | 27.46 | 21.4 |
| CDY15737 | Canola | cytosol | 27.16 | 21.02 |
| KRH57881 | Soybean | nucleus | 31.34 | 20.83 |
| TraesCS3A01G527500.1 | Wheat | mitochondrion, nucleus | 10.45 | 19.89 |
| CDY31070 | Canola | endoplasmic reticulum, golgi | 18.81 | 19.63 |
| KXG33474 | Sorghum | mitochondrion | 28.06 | 18.65 |
| TraesCS3B01G341600.1 | Wheat | mitochondrion, nucleus | 25.67 | 15.78 |
| HORVU3Hr1G075340.1 | Barley | mitochondrion | 26.57 | 15.59 |
| TraesCS3D01G307700.5 | Wheat | mitochondrion, nucleus | 26.27 | 14.52 |
| TraesCS3B01G341800.9 | Wheat | mitochondrion, nucleus | 25.97 | 14.36 |
| TraesCS3A01G295400.2 | Wheat | nucleus | 25.97 | 14.33 |
| TraesCS3B01G341700.4 | Wheat | mitochondrion, nucleus | 25.67 | 14.19 |
Protein Annotations
| EnsemblPlants:CDX76663 | EnsemblPlantsGene:GSBRNA2T00127136001 | Gene3D:3.30.160.20 | InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR10910 |
| PANTHER:PTHR10910:SF114 | PFAM:PF00035 | PFscan:PS50137 | ProteinID:CDX76663 | ProteinID:CDX76663.1 | SEG:seg |
| SMART:SM00358 | SUPFAM:SSF54768 | UniParc:UPI0004EF239C | MapMan:35.1 | : | : |
Description
BnaC08g32490D
Coordinates
chrLK031808:-:389827..392069
Molecular Weight (calculated)
36421.0 Da
IEP (calculated)
6.103
GRAVY (calculated)
-0.349
Length
335 amino acids
Sequence
(BLAST)
(BLAST)
001: MDHMYKSQLQ SYALKQNMEL PVYAAERQGP AHAPRFRCKV TVCGQTFQSQ EFCPTLKAAE HAAAKVALAS LTPLNPEASS HSFWTIINGV VVDVAYKNLL
101: QEISQKENSL LPVYATATSG PSHAPTFTST VEFAGNLYRG EEAKTKKLAE MNAAKVAFMS IKYGHPNQTP SSPSLTLEKQ EAANSNVKSS EQVSPSQLSK
201: MVTPDVPSKW IEVYEDELPD VLNAPANSVK DINITASPVA THPTNDATLT AAPAATEMMN VAAADSSAMP VNNVNESSAR VEESEKKLVM GSGYQSIPSG
301: QHVVCRPWNP GMTLPEDAEM LFRDDRFIAY RVVKQ
101: QEISQKENSL LPVYATATSG PSHAPTFTST VEFAGNLYRG EEAKTKKLAE MNAAKVAFMS IKYGHPNQTP SSPSLTLEKQ EAANSNVKSS EQVSPSQLSK
201: MVTPDVPSKW IEVYEDELPD VLNAPANSVK DINITASPVA THPTNDATLT AAPAATEMMN VAAADSSAMP VNNVNESSAR VEESEKKLVM GSGYQSIPSG
301: QHVVCRPWNP GMTLPEDAEM LFRDDRFIAY RVVKQ
001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP
Arabidopsis Description
DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.