CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
vacuole 1
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88251
EES16051
KXG33474

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G62800.1	EER88251	AT3G62800.1	21798944
AT3G62800.1	EES16051	AT3G62800.1	21798944
AT3G62800.1	KXG33474	AT3G62800.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16051	Sorghum	cytosol	68.31	83.84
VIT_08s0056g01550.t01	Wine grape	plastid	28.4	41.57
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	26.34	22.22
KXG33474	Sorghum	mitochondrion	44.44	21.43
Bra007702.1-P	Field mustard	nucleus	27.16	20.0
CDX76663	Canola	cytosol	27.57	20.0
CDY11449	Canola	nucleus	27.16	19.94
KRH57881	Soybean	nucleus	41.15	19.84
AT3G62800.1	Thale cress	nucleus	25.51	17.46
EES14943	Sorghum	nucleus	17.7	14.43
OQU82704	Sorghum	cytosol, nucleus	18.93	13.98
KXG22802	Sorghum	mitochondrion	21.4	12.04
KXG38314	Sorghum	mitochondrion, nucleus	25.1	11.3
KXG21311	Sorghum	nucleus	24.69	10.47
EES09107	Sorghum	cytosol	7.82	5.26

Protein Annotations

EnsemblPlants:EER88251	EnsemblPlantsGene:SORBI_3010G119000	EntrezGene:8073746	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR10910	PANTHER:PTHR10910:SF114
PFAM:PF00035	PFscan:PS50137	ProteinID:EER88251	ProteinID:EER88251.1	RefSeq:XP_002436884.1	SEG:seg
SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI0001A895AE	UniProt:C5Z8N2	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr10:+:13311114..13312891

Molecular Weight (calculated)

26901.0 Da

IEP (calculated)

6.715

GRAVY (calculated)

-0.460

Length

243 amino acids

Sequence
(BLAST)

001: MYKSELHALC SKKHCPKPEF VHTCEGPVHS PVFTATVTLN EKKFCAGEGT PSKKEVDNLA ARAALLSLAD SSKPFESKTD FKTQLSVYAQ KLGKVPPLYK
101: LIQEGPAHAP RFNAEVTIDG QTFGRPELLY YKLKDAEAAA AEVALDLLPP IPPQESTIPS LSYKNFIQEI AQKEGILLPV YNTVPTNKEY STAYKSSVQI
201: KCEIFEGEPR TSKKQAEMNA AKIAYHHLAL LELDGDDNER PDH

Best Arabidopsis Sequence Match ( AT3G62800.3 )
(BLAST)

001: MDHVYKGQLQ AYALQHNLEL PVYANEREGP PHAPRFRCNV TFCGQTFQSS EFFPTLKSAE HAAAKIAVAS LTPQSPEGID VAYKNLLQEI AQKESSLLPF
101: YATATSGPSH APTFTSTVEF AGKVFSGEEA KTKKLAEMSA AKVAFMSIKN GNSNQTGSPT LPSERQEDVN SNVKSSPQEI HSQPSSKVVM TPDTPSKGIK
201: VNEDEFPDLH DAPASNAKEI NVALNEPENP TNDGTLSALT TDAANGIKRN IAACSSWMPQ NPTNDGSETS SCVVDESEKK KLIMGTGHLS IPTGQHVVCR
301: PWNPEITLPQ DAEMLFRDDK FIAYRLVKP

Arabidopsis Description

DBR4Double-stranded RNA-binding protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1D4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.