CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90312
EES05486
EES15338
KXG22802
KXG26770
KXG29470
KXG38096
OQU82704
OQU91441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	KXG22802	AT1G09700.1	15821876
AT1G09700.1	OQU82704	AT1G09700.1	15821876
AT1G09700.1	EER90312	AT2G27100.1	23141542
AT1G09700.1	EES15338	AT2G27100.1	23141542
AT1G09700.1	KXG29470	AT2G27100.1	23141542
AT1G09700.1	KXG38096	AT3G03300.1	15821876
AT1G09700.1	OQU91441	AT3G03300.1	15821876
AT1G09700.1	EES05486	AT4G21670.1	23141542
AT1G09700.1	KXG26770	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG22802	Sorghum	mitochondrion	85.11	64.81
Zm00001d005065_P002	Maize	cytosol	78.12	59.22
Os05t0307400-01	Rice	cytosol	57.75	43.48
Bra019999.1-P	Field mustard	plastid	35.56	42.7
Os11t0109900-01	Rice	cytosol	61.09	42.49
TraesCS4D01G132400.1	Wheat	cytosol	52.58	42.4
CDX93488	Canola	plastid	35.26	42.18
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	51.98	41.91
CDY20678	Canola	cytosol	35.26	41.88
TraesCS4A01G180400.1	Wheat	cytosol	51.37	41.52
Bra030793.1-P	Field mustard	cytosol	34.95	41.37
CDX94957	Canola	cytosol, nucleus, plastid	34.35	39.93
GSMUA_Achr11P...	Banana	nucleus	44.68	39.3
CDY31070	Canola	endoplasmic reticulum, golgi	35.26	36.14
TraesCS5B01G148100.2	Wheat	nucleus	58.05	36.04
KRH62246	Soybean	nucleus	39.21	35.93
KRH52961	Soybean	nucleus	39.51	35.81
TraesCS5D01G143500.2	Wheat	nucleus	57.45	35.8
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	38.91	35.56
TraesCS5A01G149400.2	Wheat	mitochondrion	57.14	33.81
VIT_18s0001g07670.t01	Wine grape	nucleus	40.43	33.25
HORVU5Hr1G047100.5	Barley	nucleus	55.62	31.94
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	37.39	30.3
AT1G09700.1	Thale cress	plastid	36.78	28.88
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	37.39	28.41
EES16051	Sorghum	cytosol	13.68	22.73
EES14943	Sorghum	nucleus	17.63	19.46
EER88251	Sorghum	cytosol, mitochondrion, nucleus	13.98	18.93
Os12t0109900-02	Rice	cytosol	21.58	15.37
KXG38314	Sorghum	mitochondrion, nucleus	21.28	12.96
KXG33474	Sorghum	mitochondrion	18.24	11.9
KXG21311	Sorghum	nucleus	20.06	11.52
EES09107	Sorghum	cytosol	9.42	8.59

Protein Annotations

MapMan:16.10.2.1.2	Gene3D:3.30.160.20	UniProt:A0A1Z5RG34	InterPro:DRB	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003725	GO:GO:0005488	InterPro:IPR014720	EnsemblPlants:OQU82704	ProteinID:OQU82704
ProteinID:OQU82704.1	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR11207	PANTHER:PTHR11207:SF1	SMART:SM00358
EnsemblPlantsGene:SORBI_3005G008600	SUPFAM:SSF54768	UniParc:UPI000B8B9ACC	InterPro:dsRBD_dom	:	:

Description

hypothetical protein

Coordinates

chr5:-:655034..660491

Molecular Weight (calculated)

36369.2 Da

IEP (calculated)

7.036

GRAVY (calculated)

-0.604

Length

329 amino acids

Sequence
(BLAST)

001: VENCYVFKSR LQEYAQKVGI TTLEYHTLKE GPSHEPVFKS TVVVNNTRYE SLPGFFSRKA AEQSAAEVAL MEIAMSETRG IPAVQETGLC KNLLQEYAQK
101: MNYAIPSYIC TKQASGPFIC SVEIGGILYI GAAARTKKGA EIKAARTALL AIQGQSEIVA NGVKNYIVVP GQRPIKETDK KPIGTPKPLK VKKRGSKRKW
201: NKRKFMGMAN QIAEEDVQEG HEMLLQYDSE NSRRIEYELP GDTAMVQFNK EAIMMQPGSY APSNAEVVKP NNEAETIEHE SVSANVTSRS NGDSTDVKEA
301: PSDTSMLQGE ESETTRQETP HTGERVQPN

Best Arabidopsis Sequence Match ( AT1G09700.1 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.