CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05486
KXG22802
KXG26770
OQU82704

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	KXG22802	AT1G09700.1	23141542
AT2G27100.1	OQU82704	AT1G09700.1	23141542
AT2G27100.1	EES05486	AT4G21670.1	23141542
AT2G27100.1	KXG26770	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d036495_P001	Maize	nucleus	91.16	90.03
Zm00001d014655_P001	Maize	nucleus, plastid	91.44	87.87
Os06t0698859-01	Rice	nucleus	80.08	78.98
TraesCS7B01G323700.2	Wheat	nucleus	74.19	75.57
TraesCS7A01G423200.1	Wheat	nucleus	73.49	74.86
TraesCS7D01G416100.1	Wheat	nucleus	73.07	74.43
HORVU7Hr1G097860.2	Barley	plastid	71.25	73.3
VIT_00s0220g00050.t01	Wine grape	cytosol	4.35	63.27
VIT_13s0047g00310.t01	Wine grape	nucleus	50.77	61.77
EES15338	Sorghum	nucleus	51.61	57.32
VIT_06s0009g01570.t01	Wine grape	nucleus	58.91	57.14
AT2G27100.1	Thale cress	nucleus	56.24	55.69
Bra034322.1-P	Field mustard	nucleus	53.02	54.62
Solyc01g009090.2.1	Tomato	nucleus	57.08	54.41
KRH56284	Soybean	endoplasmic reticulum	54.42	54.34
KRH44717	Soybean	nucleus	54.56	54.25
CDX77068	Canola	nucleus	52.31	54.06
CDX71472	Canola	nucleus	53.3	54.05
Bra012034.1-P	Field mustard	nucleus	53.58	53.8
CDY04478	Canola	nucleus	53.44	53.66
KRH62750	Soybean	nucleus	53.44	53.59
GSMUA_Achr5P22680_001	Banana	extracellular	12.48	46.11
KXG29470	Sorghum	nucleus, plastid	49.09	43.1

Protein Annotations

EnsemblPlants:EER90312	EnsemblPlantsGene:SORBI_3010G249100	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:Arsenite-R_2
InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2	PFAM:PF04959
PFAM:PF12066	ProteinID:EER90312	ProteinID:EER90312.1	RefSeq:XP_002438945.1	ScanProsite:PS00028	SEG:seg
unigene:Sbi.11751	UniParc:UPI0001A8976E	UniProt:C5Z8V1	MapMan:15.5.15	MapMan:16.10.2.1.3	:

Description

hypothetical protein

Coordinates

chr10:-:58876038..58882148

Molecular Weight (calculated)

79167.5 Da

IEP (calculated)

8.985

GRAVY (calculated)

-1.044

Length

713 amino acids

Sequence
(BLAST)

001: MADVLDPASD APRARRPPPP PPDSPEDPSP QLPPPPPGGP PAASRKRSRS PPPPPPPPLG SSRPQRYRDH RGGGGGRGGS SPSPPPYRGS RRHSPPRRSP
101: SPPFKRSRRD DGYDRRGGRR SPPRYGYDDR RRGYDHERGG GRGGYEDDRN HGRYLNRAPD WPDSGYGAAN DGPGVTQREG LMTYKQFMQV LEDDISPSEA
201: ERRYQEYRTE YITTQKRAYF DLHKNEDWLK DKYHPTNLLS VIERRNERCK VIAKDFFLDL QNGTLDLGPG ITAGAASKPG GSDGNSEDDM DNDKRRKHGK
301: DSSKATDSLS GAPKAHPVSS ESRRVQADIE QTLALVRKLD AEKAIEGNVL SSCDHDKSDV DKSHIGSMGP IIIIRGLTTV KGLEGVELLD TILTYLWRIH
401: GVDYYGTSES HEAKGLRHVR VDSKTSSTSD VSAADWEKKL DTFWQERLNG QDPLVILTAK DKIDAAAAEV LEPLVRKIRD EKYGWKYGCG AKGCTKLFHA
501: PEFVHKHLRL KHPDLVLEST SKVREDLYFQ NYMNDPNAPG GTPVMQQSAP DRGRRRPSMD NRLKFDRGSN REHDKSERDG GRYGRGDQSP SRDGPDDQMF
601: DGFRGRSSNG PFVAEFPPPP ILMPVPGAGP LGPFVPAPPE IAMHMLREQG PPPPFEPNGP PHGNTGMLGP MMGGPAPIIA MPPNFRHDPR RLRSYNDLDA
701: PDEEVTVLDY RSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.