CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05486
KXG22802
KXG26770
OQU82704

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	KXG22802	AT1G09700.1	23141542
AT2G27100.1	OQU82704	AT1G09700.1	23141542
AT2G27100.1	EES05486	AT4G21670.1	23141542
AT2G27100.1	KXG26770	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046965_P001	Maize	nucleus	38.32	88.49
Zm00001d031542_P001	Maize	nucleus	88.94	85.48
HORVU7Hr1G052570.1	Barley	nucleus	67.45	82.16
Zm00001d006696_P001	Maize	nucleus	30.22	81.86
HORVU0Hr1G020790.1	Barley	nucleus	55.76	80.45
Os08t0517300-01	Rice	plastid	78.82	78.21
TraesCS7B01G150500.1	Wheat	nucleus	77.1	76.98
TraesCS7A01G254300.1	Wheat	nucleus	76.64	76.52
TraesCS7D01G252800.1	Wheat	nucleus	76.32	76.21
VIT_00s0220g00050.t01	Wine grape	cytosol	4.83	63.27
VIT_13s0047g00310.t01	Wine grape	nucleus	50.16	54.95
EER90312	Sorghum	nucleus	57.32	51.61
Bra034322.1-P	Field mustard	nucleus	53.58	49.71
CDX77068	Canola	nucleus	53.12	49.42
VIT_06s0009g01570.t01	Wine grape	nucleus	56.39	49.25
KRH56284	Soybean	endoplasmic reticulum	54.67	49.16
CDX71472	Canola	nucleus	53.43	48.79
KRH44717	Soybean	nucleus	54.36	48.67
AT2G27100.1	Thale cress	nucleus	54.36	48.47
Solyc01g009090.2.1	Tomato	nucleus	56.39	48.4
KRH62750	Soybean	nucleus	53.58	48.38
Bra012034.1-P	Field mustard	nucleus	53.27	48.17
CDY04478	Canola	nucleus	53.12	48.03
KXG29470	Sorghum	nucleus, plastid	42.83	33.87

Protein Annotations

MapMan:15.5.15	MapMan:16.10.2.1.3	EntrezGene:8062421	InterPro:Arsenite-R_2	UniProt:C5YI88	InterPro:DUF3546
EnsemblPlants:EES15338	ProteinID:EES15338	ProteinID:EES15338.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2
EnsemblPlantsGene:SORBI_3007G200600	unigene:Sbi.3422	UniParc:UPI0001A878B9	RefSeq:XP_002445843.1	InterPro:Znf_C2H2_type	SEG:seg

Description

hypothetical protein

Coordinates

chr7:-:63151274..63161821

Molecular Weight (calculated)

70501.3 Da

IEP (calculated)

6.840

GRAVY (calculated)

-0.926

Length

642 amino acids

Sequence
(BLAST)

001: MAEVADASPP PATTGGGDRK RGRASSPVLP PPPPGPPPPG PHKRRREDGG GGFDRRRLGP VGGGGHDQDD RRYGNGLGGV GGRGGDGRYT SRAPDWSDSG
101: RGGWNEGPGN SRREGLMSYK QFIQELEDDV SPVEAQSRYE EYKSEYITTQ KKAYFDLHKD EDWLRNKYHP TNLENVIERR NELARTTAND FFLQLQSGSL
201: DTGPGLMGSA VNKSGNNSSK NLDAVEGDGK KGKLGKGPDD SYYAAPKAHP VSSEVRRIRI DIEQAQALIC KLDSEKGIEN SVLSSSDHEK SDRDKSHGSM
301: GPIVIIRGSS TVKGLEGAEL LDTLVTYLWR IHGVDYYGMS ETNEPKGLRH VKADARTYNG ASSNGAEWEN KLDSFWQDRI QGQDPLEMLK AKEKIDGAAT
401: EVLDPYVRKI RDEKYGWKYG CGAKGCTKLF HAAEFVQKHL KLKHADLVVD LTSKAREDIY FENYMNDPKA PGGTPIMQQP APRGKGRQRP PIESRLRDER
501: GNHRFDRNVD SPTHDGSSEN PDDPIYDSFG DPIMHGAFPP DIPAPPVLMP VPGAGPLGPF IPAPPEVAMH MLRDQGAPPP FEPTGGPHPR KAGRGVGPQI
601: RGPSPIFTAP PPHQMHDPRR IRSYQDLDAP EDEVTVMDYR SL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.