CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90312
EES05486
EES15338
KXG22802
KXG26770
KXG29470
KXG38096
OQU82704
OQU91441

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	KXG22802	AT1G09700.1	15821876
AT1G09700.1	OQU82704	AT1G09700.1	15821876
AT1G09700.1	EER90312	AT2G27100.1	23141542
AT1G09700.1	EES15338	AT2G27100.1	23141542
AT1G09700.1	KXG29470	AT2G27100.1	23141542
AT1G09700.1	KXG38096	AT3G03300.1	15821876
AT1G09700.1	OQU91441	AT3G03300.1	15821876
AT1G09700.1	EES05486	AT4G21670.1	23141542
AT1G09700.1	KXG26770	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU82704	Sorghum	cytosol, nucleus	64.81	85.11
Os05t0307400-01	Rice	cytosol	50.69	50.11
Os11t0109900-01	Rice	cytosol	53.24	48.63
TraesCS4D01G132400.1	Wheat	cytosol	45.83	48.53
TraesCS4A01G180400.1	Wheat	cytosol	44.68	47.42
Bra019999.1-P	Field mustard	plastid	29.17	45.99
CDX93488	Canola	plastid	28.94	45.45
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	42.82	45.34
CDY20678	Canola	cytosol	28.7	44.77
Bra030793.1-P	Field mustard	cytosol	28.47	44.24
TraesCS5D01G143500.2	Wheat	nucleus	52.31	42.8
CDX94957	Canola	cytosol, nucleus, plastid	28.01	42.76
TraesCS5B01G148100.2	Wheat	nucleus	52.31	42.64
TraesCS5A01G149400.2	Wheat	mitochondrion	54.4	42.27
GSMUA_Achr11P...	Banana	nucleus	35.88	41.44
HORVU5Hr1G047100.5	Barley	nucleus	53.01	39.97
CDY31070	Canola	endoplasmic reticulum, golgi	28.7	38.63
KRH62246	Soybean	nucleus	31.94	38.44
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	31.94	38.33
KRH52961	Soybean	nucleus	32.18	38.29
VIT_18s0001g07670.t01	Wine grape	nucleus	34.03	36.75
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	31.25	33.25
AT1G09700.1	Thale cress	plastid	31.02	31.98
Solyc04g076420.2.1	Tomato	cytosol, nucleus, plastid	31.48	31.41
EES16051	Sorghum	cytosol	11.57	25.25
EES14943	Sorghum	nucleus	15.74	22.82
EER88251	Sorghum	cytosol, mitochondrion, nucleus	12.04	21.4
Os12t0109900-02	Rice	cytosol	19.21	17.97
KXG33474	Sorghum	mitochondrion	16.9	14.48
KXG38314	Sorghum	mitochondrion, nucleus	16.9	13.52
KXG21311	Sorghum	nucleus	16.67	12.57
EES09107	Sorghum	cytosol	8.1	9.7

Protein Annotations

EnsemblPlants:KXG22802	EnsemblPlantsGene:SORBI_3008G009600	Gene3D:3.30.160.20	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0005488	InterPro:DRB	InterPro:IPR014720	InterPro:dsRBD_dom	PANTHER:PTHR11207
PANTHER:PTHR11207:SF1	PFAM:PF00035	PFscan:PS50137	ProteinID:KXG22802	ProteinID:KXG22802.1	SEG:seg
SMART:SM00358	SUPFAM:SSF54768	UniParc:UPI00081ADBB2	UniProt:A0A1B6PAS0	MapMan:16.10.2.1.2	:

Description

hypothetical protein

Coordinates

chr8:-:772794..775099

Molecular Weight (calculated)

46836.9 Da

IEP (calculated)

8.118

GRAVY (calculated)

-0.536

Length

432 amino acids

Sequence
(BLAST)

001: MLRTHAKRKN SRIPREALHR NRTLSRTLTL QGGGGGGAMD GGGAASPDTA ICIAPGPGPI VAVPPAGIRV ENCYVFKSRL QEYAQKAGLP TPEYHTLKEG
101: PSHEPVFKST VLVNNTTYES LPGFFSRKAA EQSAAEVALM EIAMSAPVAE TRSIPAVQET GLCKNLLQEY AQKMNYAIPS YICTKQASGV APFICTVEIG
201: GIQYIGAAAR TKKEAEIKAA RTALLAIQGQ SEGCANGAKK YIVVPGQRPV KETDKKPTET PKPLKVKKRG SKRKWNKKKL VGMANQIVDA QKDVEGLGML
301: LQYDHEEAGR IEYELSRDTA MVQFNKEVIV MQPGEGDRIV QPESPRDPAQ VQHNNAARSV EQDPLSNTEV VMPNNEAITI EHEPLSAYVP LQSNGDSTDV
401: KEAPSNTSMM QGEESETTRQ EAPHTGELVQ PN

Best Arabidopsis Sequence Match ( AT1G09700.2 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.