Factsheet for Solyc04g076420.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g009090.2.1
Solyc02g078550.2.1
Solyc04g076420.2.1
Solyc06g048960.2.1
Solyc11g008520.1.1
Solyc11g008530.1.1
Solyc11g008540.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09700.1	Solyc04g076420.2.1	AT1G09700.1	15821876
AT1G09700.1	Solyc01g009090.2.1	AT2G27100.1	23141542
AT1G09700.1	Solyc06g048960.2.1	AT3G03300.1	15821876
AT1G09700.1	Solyc11g008520.1.1	AT3G03300.1	15821876
AT1G09700.1	Solyc11g008530.1.1	AT3G03300.1	15821876
AT1G09700.1	Solyc11g008540.1.1	AT3G03300.1	15821876
AT1G09700.1	Solyc02g078550.2.1	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400024215	Potato	cytosol, nucleus, plastid	89.15	95.07
CDX93488	Canola	plastid	30.48	48.0
Bra019999.1-P	Field mustard	plastid	30.25	47.81
Bra030793.1-P	Field mustard	cytosol	29.56	46.04
CDY20678	Canola	cytosol	29.1	45.49
CDX94957	Canola	cytosol, nucleus, plastid	29.56	45.23
KRH62246	Soybean	nucleus	33.95	40.95
KRH52961	Soybean	nucleus	34.18	40.77
CDY31070	Canola	endoplasmic reticulum, golgi	29.33	39.56
VIT_18s0001g07670.t01	Wine grape	nucleus	35.33	38.25
OQU82704	Sorghum	cytosol, nucleus	28.41	37.39
GSMUA_Achr11P...	Banana	nucleus	30.72	35.56
AT1G09700.1	Thale cress	plastid	32.1	33.17
GSMUA_Achr8P16450_001	Banana	endoplasmic reticulum, golgi, vacuole	26.33	31.67
KXG22802	Sorghum	mitochondrion	31.41	31.48
Zm00001d005065_P002	Maize	cytosol	31.41	31.34
Os05t0307400-01	Rice	cytosol	30.25	29.98
TraesCS4D01G132400.1	Wheat	cytosol	27.71	29.41
HORVU4Hr1G024480.3	Barley	cytosol, nucleus	27.71	29.41
TraesCS4A01G180400.1	Wheat	cytosol	27.25	28.99
Os11t0109900-01	Rice	cytosol	31.18	28.54
TraesCS5D01G143500.2	Wheat	nucleus	30.95	25.38
TraesCS5B01G148100.2	Wheat	nucleus	30.95	25.28
Solyc03g118950.1.1	Tomato	cytosol, nucleus, plastid	11.32	24.75
TraesCS5A01G149400.2	Wheat	mitochondrion	30.72	23.92
HORVU5Hr1G047100.5	Barley	nucleus	30.95	23.39
Solyc01g056620.2.1	Tomato	mitochondrion, nucleus	14.55	21.88
Solyc02g091460.2.1	Tomato	nucleus	9.01	21.31
Solyc11g069460.1.1	Tomato	nucleus	14.55	15.22
Os12t0109900-02	Rice	cytosol	14.09	13.2
Solyc05g056100.2.1	Tomato	cytosol, nucleus, plastid	15.7	12.3
Solyc01g009190.1.1	Tomato	nucleus	12.01	11.76

Protein Annotations

MapMan:16.10.2.1.2	Gene3D:3.30.160.20	InterPro:DRB	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0003725	GO:GO:0003824	GO:GO:0004518	GO:GO:0004525	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005654	GO:GO:0006139
GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009719
GO:GO:0009733	GO:GO:0009735	GO:GO:0009737	GO:GO:0009987	GO:GO:0010267	GO:GO:0010305
GO:GO:0010445	GO:GO:0010589	GO:GO:0016787	GO:GO:0019538	GO:GO:0030422	GO:GO:0031053
GO:GO:0031054	GO:GO:0035196	GO:GO:0035198	GO:GO:0035279	GO:GO:0040029	GO:GO:0042802
GO:GO:0090502	InterPro:IPR014720	UniProt:K4BU80	PFAM:PF00035	PFscan:PS50137	PANTHER:PTHR11207
PANTHER:PTHR11207:SF1	SMART:SM00358	SUPFAM:SSF54768	EnsemblPlantsGene:Solyc04g076420.2	EnsemblPlants:Solyc04g076420.2.1	UniParc:UPI0002765C7C
InterPro:dsRBD_dom	:	:	:	:	:

Description

Double-stranded RNA-binding protein 1 [Source:Projected from Arabidopsis thaliana (AT1G09700) UniProtKB/Swiss-Prot;Acc:O04492]

Coordinates

chr4:+:61316385..61321520

Molecular Weight (calculated)

45838.7 Da

IEP (calculated)

5.122

GRAVY (calculated)

-0.309

Length

433 amino acids

Sequence
(BLAST)

001: MANNESIRSM TSCYVFKSRL QEYAQKVGLP TPVYETIKEG PSHEPTFTST VIVDNDRYDS LPGFYNRKAA EQSAAEVALM SLGNSGSVEN LSQPVHETGL
101: CKNLLQEYAQ KMNFAIPQYE CERYDSESKI ISFTCTVDVG GMKYIGAAAR TKKEAEIKAA RTALLAVQSS GFAPNYSSYT VVPMKKVTDL AISNQESAAA
201: LKPKKHRFKK KQTRNFSDVS YHVRTKIFGD SEVQMVNQAK PEMHENAAVM TPGTGSGPAP FAGTMGDLVP SNNLSSDYGT SNIGINSQCG GGVTTEGNAV
301: IGVDYGTSKI GINSQCGGGV TTEGNAVIGV EQVTLEVAPV AWNDNLHVQD LHLLHENAAV MTQGTGSGPA PFAGTMGDLV PSNNCGSDYG TSNLGINSQC
401: GEGATTEGNA GIGVEQVTSE VAPVACNDNL HVL

Best Arabidopsis Sequence Match ( AT1G09700.1 )
(BLAST)

001: MTSTDVSSGV SNCYVFKSRL QEYAQKYKLP TPVYEIVKEG PSHKSLFQST VILDGVRYNS LPGFFNRKAA EQSAAEVALR ELAKSSELSQ CVSQPVHETG
101: LCKNLLQEYA QKMNYAIPLY QCQKVETLGR VTQFTCTVEI GGIKYTGAAT RTKKDAEISA GRTALLAIQS DTKNNLANYN TQLTVLPCEK KTIQAAIPLK
201: ETVKTLKARK AQFKKKAQKG KRTVAKNPED IIIPPQPTDH CQNDQSEKIE TTPNLEPSSC MNGLKEAAFG SVETEKIETT PNLEPPSCMN GLKEAAFGSV
301: ETEKIETTPN LEPPSCMNGL KEAAFGSVET EKIETTPNLE PSSCMNGLKE AAFGSVETEK IETTPNLEPP SCMNGLKEAA FGSVETEKIE TTPNLESSSC
401: MSGLKEAAFG SVETEASHA

Arabidopsis Description

DRB1Double-stranded RNA-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:O04492]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.