Factsheet for Solyc01g009090.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 25464976
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g078550.2.1
Solyc04g076420.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	Solyc04g076420.2.1	AT1G09700.1	23141542
AT2G27100.1	Solyc02g078550.2.1	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_06s0009g01570.t01	Wine grape	nucleus	68.58	69.8
AT2G27100.1	Thale cress	nucleus	63.24	65.69
GSMUA_Achr6P01800_001	Banana	nucleus	47.46	65.62
GSMUA_Achr7P19610_001	Banana	nucleus	47.19	65.13
CDX77068	Canola	nucleus	58.69	63.62
Bra034322.1-P	Field mustard	nucleus	58.69	63.44
KRH44717	Soybean	nucleus	60.7	63.32
KRH56284	Soybean	endoplasmic reticulum	60.16	63.03
KRH62750	Soybean	nucleus	58.96	62.03
CDY04478	Canola	nucleus	58.56	61.69
Bra012034.1-P	Field mustard	nucleus	58.56	61.69
CDX71472	Canola	nucleus	57.75	61.45
HORVU7Hr1G052570.1	Barley	nucleus	42.78	60.72
HORVU0Hr1G020790.1	Barley	nucleus	35.56	59.78
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	35.7	58.55
GSMUA_Achr10P...	Banana	nucleus	56.42	57.49
EER90312	Sorghum	nucleus	54.41	57.08
EES15338	Sorghum	nucleus	48.4	56.39
HORVU7Hr1G097860.2	Barley	plastid	52.01	56.13
Zm00001d049767_P001	Maize	extracellular, nucleus	47.06	56.05
TraesCS7A01G423200.1	Wheat	nucleus	52.41	56.0
TraesCS6A01G119000.1	Wheat	nucleus	37.43	56.0
Zm00001d047626_P001	Maize	cytosol	8.16	55.96
TraesCS7B01G323700.2	Wheat	nucleus	52.27	55.86
TraesCS7D01G416100.1	Wheat	nucleus	52.27	55.86
Zm00001d036495_P001	Maize	nucleus	53.88	55.82
Os08t0517300-01	Rice	plastid	47.99	55.49
Os06t0698859-01	Rice	nucleus	53.61	55.46
TraesCS7A01G254300.1	Wheat	nucleus	47.46	55.21
TraesCS7B01G150500.1	Wheat	nucleus	47.46	55.21
TraesCS7D01G252800.1	Wheat	nucleus	47.33	55.05
Zm00001d014655_P001	Maize	nucleus, plastid	53.88	54.31
HORVU6Hr1G021620.2	Barley	nucleus	38.77	54.21
Zm00001d046965_P001	Maize	nucleus	19.92	53.6
Zm00001d031542_P001	Maize	nucleus	45.72	51.2
Zm00001d006696_P001	Maize	nucleus	15.91	50.21
GSMUA_Achr5P22680_001	Banana	extracellular	12.57	48.7
Zm00001d046814_P001	Maize	cytosol	11.9	47.85
Os02t0149600-01	Rice	nucleus	41.98	47.15
TraesCS6B01G147000.1	Wheat	nucleus	44.65	44.65
TraesCS6D01G108900.1	Wheat	nucleus	43.58	43.24
Zm00001d018785_P001	Maize	cytosol	15.78	42.91
KXG29470	Sorghum	nucleus, plastid	40.11	36.95

Protein Annotations

MapMan:15.5.15	MapMan:16.10.2.1.3	InterPro:Arsenite-R_2	InterPro:DUF3546	GO:GO:0000381	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005654	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0005846	GO:GO:0006139
GO:GO:0006412	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008380	GO:GO:0009058
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0010267	GO:GO:0010445	GO:GO:0016607
GO:GO:0019538	GO:GO:0031053	GO:GO:0040029	GO:GO:0048367	GO:GO:0048509	GO:GO:2000011
InterPro:IPR013087	UniProt:K4ATA5	PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028	PANTHER:PTHR13165
PANTHER:PTHR13165:SF2	EnsemblPlantsGene:Solyc01g009090.2	EnsemblPlants:Solyc01g009090.2.1	UniParc:UPI0002763510	InterPro:Znf_C2H2_type	SEG:seg

Description

Serrate RNA effector molecule [Source:Projected from Arabidopsis thaliana (AT2G27100) UniProtKB/Swiss-Prot;Acc:Q9ZVD0]

Coordinates

chr1:-:3095457..3108637

Molecular Weight (calculated)

83663.2 Da

IEP (calculated)

9.014

GRAVY (calculated)

-1.174

Length

748 amino acids

Sequence
(BLAST)

001: MAEVMDAPSE GLERRRERSK ENPNKSTEEP PVSSPPPPPP PPPSRRGRDR DSRERRDDRD FDRRGGRGDY YDRNRSPPHH PPGRERDYKR GRPSHSPPPP
101: LPPYRDRRGG YSPPHRRSPP FPPYKRSRRD DYDGRRGSPR GGFGHGDRRY GYDHQGGYDR EMGGRPGYPD ERHHGRFAGR SSGGYRGGDW GPVRGGFADS
201: FGAGNNQREG LKSYKQFIQE LEDDILPAEA ERRYQEYKAG YIEAQKRAYF NAHKDEEWLK DKYHPSNLIS VIERRNELAR KSAKDFLLDL QSGTLDIGPG
301: VAPPPTNKSG QSSEPNSDEE ADENGKRRRH GRGHNKDPDL LLAAPKAHLV SSDPRRVQID VEQAQALVRK LDSEKGIEDN ILSRSDNDRG SRDKSHGSTG
401: PVIIIRGLTS VKGLEGTELL DTLLTYLWRI HGVDYYGLAE TNEAKGLRHV RVDGKAADAT SNGAEWESKV DSHWQDRLKG KDPLEVMAAK EKLDAVAAEA
501: LDPYVRKIRD EKYGWKYGCG AKGCTKLFHA SEFVHKHLKL KHPDLSVDLT TKVREDLYFQ NYMNDENSPG GTPVMLPSVP KEKPLRRRPG LDGRLKDDRG
601: NRKDRDGRAN GGERFDMSEN PQSGDFQSNN DGASGGNPDE EMFDTFGGQG IPVASFPSDM APPPVLMPVP GAGPLGPFVP APPEVAMRMM REQGGPTPFE
701: GGRNGRSGPA GPIIALPPGF RQDPRRLRSY QDLDAPEDEV TVIDYRSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.