Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19610_001 | Banana | nucleus | 83.73 | 83.58 |
| GSMUA_Achr5P22670_001 | Banana | endoplasmic reticulum, golgi | 62.29 | 73.9 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 68.95 | 63.65 |
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 5.73 | 63.27 |
| GSMUA_Achr10P... | Banana | nucleus | 85.4 | 62.94 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 22.0 | 61.66 |
| KRH56284 | Soybean | endoplasmic reticulum | 68.76 | 52.1 |
| KRH62750 | Soybean | nucleus | 68.21 | 51.9 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 68.95 | 50.75 |
| KRH44717 | Soybean | nucleus | 65.99 | 49.79 |
| CDX77068 | Canola | nucleus | 62.29 | 48.84 |
| Bra034322.1-P | Field mustard | nucleus | 62.29 | 48.7 |
| AT2G27100.1 | Thale cress | nucleus | 64.33 | 48.33 |
| Solyc01g009090.2.1 | Tomato | nucleus | 65.62 | 47.46 |
| CDX71472 | Canola | nucleus | 61.55 | 47.37 |
| CDY04478 | Canola | nucleus | 60.63 | 46.2 |
| Bra012034.1-P | Field mustard | nucleus | 60.44 | 46.06 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P01800_001 | EnsemblPlants:GSMUA_Achr6T01800_001 | EnsemblPlantsGene:GSMUA_Achr6G01800_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Arsenite-R_2 | InterPro:DUF3546 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 |
| PFAM:PF04959 | PFAM:PF12066 | ScanProsite:PS00028 | SEG:seg | UniParc:UPI0002965BBC | UniProt:M0T3C8 |
| MapMan:15.5.15 | MapMan:16.10.2.1.3 | : | : | : | : |
Description
Serrate RNA effector molecule [Source:GMGC_GENE;Acc:GSMUA_Achr6G01800_001]
Coordinates
chr6:+:1172995..1176607
Molecular Weight (calculated)
60847.5 Da
IEP (calculated)
7.039
GRAVY (calculated)
-0.849
Length
541 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYKQFIQEL EDDIFPAEAE RRYEEYRSEY ISTQKRAYFE AHKEERWLKD KYHPTNLVAV IERRKEQARS VAKEFLLDLQ SGTLDLGPGV TVSSTSKSGN
101: GSEPNSEDEA DTNGKRRRHN KGPAKENDLH SAALKAHPVS SEPRRIQADI EQAQALVRKL DMEKGIQDNV LSSSGHDKLD AEKSRGGSMG RIIIIRGLTT
201: VKGLEGVELL DTLITFLWRI HGLDYYGMSE TSELKGLRHV RADNKTHDGT NASGSDWEKK LDSFWLARLQ GQDPLETLTA KDKIDAAATE ALDPFVRKIR
301: DEKYGWKYGC GAKGCTKLFH APEYVHKHLR LKHPDLVIEL TSKVREDLYF QNYMNDPNAP GGTPVMQQSA LVKMQRRRPL LDNRLRDERG NRRDLDRNDR
401: YDDRHDRSDN SPRDGNGSLE GENHEKLLYD AYGGQGLHGA FPSDIPPPLL LPVPGAGPLG PFIPAPPEIA MHMLRETGGS SSFESNGGSR GRKGRLGPQV
501: SGPAPILPIP SAFRHDPRRI RSYQDLDAPD DEVTVVDYRS L
101: GSEPNSEDEA DTNGKRRRHN KGPAKENDLH SAALKAHPVS SEPRRIQADI EQAQALVRKL DMEKGIQDNV LSSSGHDKLD AEKSRGGSMG RIIIIRGLTT
201: VKGLEGVELL DTLITFLWRI HGLDYYGMSE TSELKGLRHV RADNKTHDGT NASGSDWEKK LDSFWLARLQ GQDPLETLTA KDKIDAAATE ALDPFVRKIR
301: DEKYGWKYGC GAKGCTKLFH APEYVHKHLR LKHPDLVIEL TSKVREDLYF QNYMNDPNAP GGTPVMQQSA LVKMQRRRPL LDNRLRDERG NRRDLDRNDR
401: YDDRHDRSDN SPRDGNGSLE GENHEKLLYD AYGGQGLHGA FPSDIPPPLL LPVPGAGPLG PFIPAPPEIA MHMLRETGGS SSFESNGGSR GRKGRLGPQV
501: SGPAPILPIP SAFRHDPRRI RSYQDLDAPD DEVTVVDYRS L
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.