Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P01800_001 | Banana | nucleus | 83.58 | 83.73 |
| GSMUA_Achr5P22670_001 | Banana | endoplasmic reticulum, golgi | 62.36 | 74.12 |
| VIT_00s0220g00050.t01 | Wine grape | cytosol | 6.46 | 71.43 |
| GSMUA_Achr10P... | Banana | nucleus | 86.9 | 64.17 |
| VIT_13s0047g00310.t01 | Wine grape | nucleus | 66.61 | 61.6 |
| GSMUA_Achr5P22680_001 | Banana | extracellular | 21.77 | 61.14 |
| KRH56284 | Soybean | endoplasmic reticulum | 69.0 | 52.38 |
| KRH62750 | Soybean | nucleus | 68.63 | 52.32 |
| VIT_06s0009g01570.t01 | Wine grape | nucleus | 69.74 | 51.43 |
| KRH44717 | Soybean | nucleus | 67.34 | 50.91 |
| Bra034322.1-P | Field mustard | nucleus | 63.47 | 49.71 |
| CDX77068 | Canola | nucleus | 63.28 | 49.71 |
| AT2G27100.1 | Thale cress | nucleus | 65.5 | 49.31 |
| CDX71472 | Canola | nucleus | 62.55 | 48.22 |
| Solyc01g009090.2.1 | Tomato | nucleus | 65.13 | 47.19 |
| CDY04478 | Canola | nucleus | 61.25 | 46.76 |
| Bra012034.1-P | Field mustard | nucleus | 61.25 | 46.76 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P19610_001 | EnsemblPlants:GSMUA_Achr7T19610_001 | EnsemblPlantsGene:GSMUA_Achr7G19610_001 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:Arsenite-R_2 | InterPro:DUF3546 | InterPro:IPR013087 | InterPro:Znf_C2H2_type | PANTHER:PTHR13165 | PANTHER:PTHR13165:SF2 |
| PFAM:PF04959 | PFAM:PF12066 | ScanProsite:PS00028 | SEG:seg | UniParc:UPI0002963C86 | UniProt:M0TIZ8 |
| MapMan:15.5.15 | MapMan:16.10.2.1.3 | : | : | : | : |
Description
Serrate RNA effector molecule [Source:GMGC_GENE;Acc:GSMUA_Achr7G19610_001]
Coordinates
chr7:-:22556979..22561037
Molecular Weight (calculated)
60511.1 Da
IEP (calculated)
6.572
GRAVY (calculated)
-0.849
Length
542 amino acids
Sequence
(BLAST)
(BLAST)
001: MTYKQFIQEL EDDISPTEAE YRYEEYRSEY ISTQKRAYFE AHKEKQWLKD KYHPTNLVAV IERRKEQART LAKEFLLDLQ SGTLDLGPGL TSSSASKSGN
101: GSEPNSEDEA GPGGKRRRHG RGTEKENDLL SATPKVHPVS SEPRRIQVDI EQAQALVRKL DMEKGIEDNV LSSSGHGKLE VEKSHGGSMG PIVIIRGLNA
201: IKGLEGVELL DTLITYLWRV HGLDYYGMSE SSEAKGLRHV RADNKTHDGT DASGSDWEKK LDSFWQARLE GQDPLETLTA KDKIDAAATE ALDPLVRKIR
301: DEKYGWKYGC GAKGCTKLFH APEFVHKHLR LKHLDLVMEL TSKVREDLYF QNYMNDPNAP GGTPVMQQSA SKVKMQKKRL LDGRLRDERG NRREPNRNDG
401: DDDRHDRTDN SPRDANDGSE VENHDKPLYD AYGGQGLHGA FPSDIPPPPV LMPVPGAGPL GPFVPAPPEV AMRMLRDTSG PSSFEATGGR RGIKGRLGPQ
501: VSGSAPVLAM PPAFRHDPRR IRSYQDLDAP EDEVTVIDYR SL
101: GSEPNSEDEA GPGGKRRRHG RGTEKENDLL SATPKVHPVS SEPRRIQVDI EQAQALVRKL DMEKGIEDNV LSSSGHGKLE VEKSHGGSMG PIVIIRGLNA
201: IKGLEGVELL DTLITYLWRV HGLDYYGMSE SSEAKGLRHV RADNKTHDGT DASGSDWEKK LDSFWQARLE GQDPLETLTA KDKIDAAATE ALDPLVRKIR
301: DEKYGWKYGC GAKGCTKLFH APEFVHKHLR LKHLDLVMEL TSKVREDLYF QNYMNDPNAP GGTPVMQQSA SKVKMQKKRL LDGRLRDERG NRREPNRNDG
401: DDDRHDRTDN SPRDANDGSE VENHDKPLYD AYGGQGLHGA FPSDIPPPPV LMPVPGAGPL GPFVPAPPEV AMRMLRDTSG PSSFEATGGR RGIKGRLGPQ
501: VSGSAPVLAM PPAFRHDPRR IRSYQDLDAP EDEVTVIDYR SL
001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL
Arabidopsis Description
SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.