Factsheet for VIT_06s0009g01570.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	mitochondrion, nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0370g00040.t01
VIT_18s0001g07670.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	VIT_18s0001g07670.t01	AT1G09700.1	23141542
AT2G27100.1	VIT_00s0370g00040.t01	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_00s0220g00050.t01	Wine grape	cytosol	5.85	87.76
VIT_13s0047g00310.t01	Wine grape	nucleus	58.1	72.87
GSMUA_Achr7P19610_001	Banana	nucleus	51.43	69.74
GSMUA_Achr6P01800_001	Banana	nucleus	50.75	68.95
Solyc01g009090.2.1	Tomato	nucleus	69.8	68.58
AT2G27100.1	Thale cress	nucleus	65.85	67.22
Bra034322.1-P	Field mustard	nucleus	61.36	65.17
CDX77068	Canola	nucleus	60.68	64.64
Bra012034.1-P	Field mustard	nucleus	60.95	63.1
CDX71472	Canola	nucleus	60.14	62.87
CDY04478	Canola	nucleus	60.54	62.68
GSMUA_Achr10P...	Banana	nucleus	62.59	62.67
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	38.5	62.06
HORVU7Hr1G052570.1	Barley	nucleus	44.08	61.48
HORVU0Hr1G020790.1	Barley	nucleus	36.19	59.78
EER90312	Sorghum	nucleus	57.14	58.91
TraesCS7B01G323700.2	Wheat	nucleus	54.83	57.57
Zm00001d036495_P001	Maize	nucleus	56.46	57.48
TraesCS7A01G423200.1	Wheat	nucleus	54.69	57.43
Os06t0698859-01	Rice	nucleus	56.46	57.4
HORVU7Hr1G097860.2	Barley	plastid	54.01	57.29
TraesCS7D01G416100.1	Wheat	nucleus	54.42	57.14
TraesCS6A01G119000.1	Wheat	nucleus	38.5	56.6
EES15338	Sorghum	nucleus	49.25	56.39
Zm00001d049767_P001	Maize	extracellular, nucleus	48.03	56.21
Zm00001d014655_P001	Maize	nucleus, plastid	56.19	55.66
TraesCS7A01G254300.1	Wheat	nucleus	48.3	55.21
TraesCS7B01G150500.1	Wheat	nucleus	48.16	55.05
Zm00001d047626_P001	Maize	cytosol	8.16	55.05
TraesCS7D01G252800.1	Wheat	nucleus	48.03	54.9
Os08t0517300-01	Rice	plastid	48.16	54.71
HORVU6Hr1G021620.2	Barley	nucleus	39.73	54.58
Zm00001d046965_P001	Maize	nucleus	20.0	52.88
GSMUA_Achr5P22680_001	Banana	extracellular	13.74	52.33
Zm00001d006696_P001	Maize	nucleus	16.46	51.05
Zm00001d031542_P001	Maize	nucleus	46.26	50.9
Os02t0149600-01	Rice	nucleus	44.63	49.25
TraesCS6B01G147000.1	Wheat	nucleus	46.26	45.45
Zm00001d046814_P001	Maize	cytosol	11.29	44.62
TraesCS6D01G108900.1	Wheat	nucleus	43.4	42.31
Zm00001d018785_P001	Maize	cytosol	15.78	42.18
KXG29470	Sorghum	nucleus, plastid	42.86	38.79

Protein Annotations

EntrezGene:100254817	wikigene:100254817	EntrezGene:100852542	wikigene:100852542	MapMan:15.5.15	MapMan:16.10.2.1.3
InterPro:Arsenite-R_2	ProteinID:CBI24360	ProteinID:CBI24360.3	UniProt:D7T1I0	InterPro:DUF3546	EMBL:FN595504
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	EntrezGene:LOC100254817	wikigene:LOC100254817
EntrezGene:LOC100852542	wikigene:LOC100852542	PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028	PANTHER:PTHR13165
PANTHER:PTHR13165:SF2	TIGR:TC65488	UniParc:UPI0001983934	ArrayExpress:VIT_06s0009g01570	EnsemblPlantsGene:VIT_06s0009g01570	EnsemblPlants:VIT_06s0009g01570.t01
unigene:Vvi.11803	RefSeq:XP_002270387	RefSeq:XP_002270387.2	RefSeq:XP_003632257	RefSeq:XP_003632257.1	RefSeq:XP_010651608.1
InterPro:Znf_C2H2_type	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr6:-:13426270..13464953

Molecular Weight (calculated)

83306.3 Da

IEP (calculated)

8.344

GRAVY (calculated)

-1.121

Length

735 amino acids

Sequence
(BLAST)

001: MAEVINMPLD SLDRRDGNDK SAEEQSQSQS PSPPPPPPPP SSRRRDRRDD RELDRPPNRR ADYYDRNRSS PPRERDRDYK RRSSPSPPPP YRDRRHSPPR
101: RSPPLQPYKR SRRDDAGYDG RRGSPRGGFG PGDRRFGYDY ASGYEREMGP RPGYADERPH GRYVGRPYQV GPFDWDSVRS YGDVSNMGNT QREGLMSYKQ
201: FIQELEDDIL PAEAERRYQE YKSEYISTQK RSFFDSHKDE EWLKDKYHPT NLLSVIERRN EVARKTAKDF LLDLQSGTLD LGPGVNASSL NKSGQTSDPN
301: SDEETEMGGK RRRHGRGPTK ETDLLSVAPK AHPVSSEPRR IQVDIEQAQA LVRKLDSEKG IEENILCRAD NDKLNREKSH GGSIGPVIII RGLTSVKGLE
401: GIELLDTLIT YLWRIHGLDY YGMLETNEAK GLRHVRVEGK SSDLTSNGVE WEKKFDSHWQ ERLRSQDPLE IMTAKEKIDA TAIESLDPYV RKIRDEKYGW
501: KYGCGAKGCT KLFHAAEFVH KHLKLKHPEL VMELTSKVRE DLYFLNYMSD ADAPGGTPVM QQSLLKDKTQ KRRLGPDNRL KDNRRERENR ANGSERYDRS
601: DNHQSNDFQP NDGPDGGNPG EGMFDTFGGQ GMHVAPPFPS DMPPPPVLMP VPGAGPLGPF VPAPPEVAMR MLREQGGPSP FEGGGRNGRS GPQLSGPAPV
701: LALSPGLRQD PRRLRSYQDL DAPEDEVTVI DYRSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.