CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX93488
CDX94046
CDX94957
CDX98696
CDY20678
CDY31070
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	CDX93488	AT1G09700.1	23141542
AT2G27100.1	CDX94957	AT1G09700.1	23141542
AT2G27100.1	CDY20678	AT1G09700.1	23141542
AT2G27100.1	CDY31070	AT1G09700.1	23141542
AT2G27100.1	CDX76438	AT4G21670.1	23141542
AT2G27100.1	CDX79083	AT4G21670.1	23141542
AT2G27100.1	CDX94046	AT4G21670.1	23141542
AT2G27100.1	CDX98696	AT4G21670.1	23141542
AT2G27100.1	CDY31421	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY04478	Canola	nucleus	96.02	95.07
CDX77068	Canola	nucleus	83.07	84.64
AT2G27100.1	Thale cress	nucleus	80.37	78.47
GSMUA_Achr7P19610_001	Banana	nucleus	48.22	62.55
GSMUA_Achr6P01800_001	Banana	nucleus	47.37	61.55
VIT_06s0009g01570.t01	Wine grape	nucleus	62.87	60.14
Solyc01g009090.2.1	Tomato	nucleus	61.45	57.75
HORVU7Hr1G052570.1	Barley	nucleus	43.1	57.5
KRH56284	Soybean	endoplasmic reticulum	57.47	56.58
KRH62750	Soybean	nucleus	56.9	56.26
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	36.42	56.14
KRH44717	Soybean	nucleus	57.04	55.93
HORVU0Hr1G020790.1	Barley	nucleus	34.99	55.28
GSMUA_Achr10P...	Banana	nucleus	57.47	55.04
TraesCS7B01G323700.2	Wheat	nucleus	53.63	53.86
TraesCS7A01G423200.1	Wheat	nucleus	53.49	53.71
TraesCS7D01G416100.1	Wheat	nucleus	53.34	53.57
HORVU7Hr1G097860.2	Barley	plastid	52.77	53.54
EES15338	Sorghum	nucleus	48.79	53.43
EER90312	Sorghum	nucleus	54.05	53.3
TraesCS6A01G119000.1	Wheat	nucleus	37.84	53.2
Zm00001d049767_P001	Maize	extracellular, nucleus	46.94	52.55
TraesCS7B01G150500.1	Wheat	nucleus	47.23	51.63
Os08t0517300-01	Rice	plastid	47.51	51.62
Zm00001d014655_P001	Maize	nucleus, plastid	54.34	51.48
TraesCS7A01G254300.1	Wheat	nucleus	47.08	51.48
HORVU6Hr1G021620.2	Barley	nucleus	39.12	51.4
Zm00001d036495_P001	Maize	nucleus	52.77	51.38
Os06t0698859-01	Rice	nucleus	52.63	51.18
TraesCS7D01G252800.1	Wheat	nucleus	46.8	51.17
Zm00001d046965_P001	Maize	nucleus	19.63	49.64
Zm00001d047626_P001	Maize	cytosol	7.68	49.54
Zm00001d031542_P001	Maize	nucleus	46.23	48.65
GSMUA_Achr5P22680_001	Banana	extracellular	12.8	46.63
Zm00001d006696_P001	Maize	nucleus	15.65	46.41
Os02t0149600-01	Rice	nucleus	42.53	44.89
Zm00001d018785_P001	Maize	cytosol	16.5	42.18
TraesCS6B01G147000.1	Wheat	nucleus	43.53	40.91
Zm00001d046814_P001	Maize	cytosol	10.81	40.86
TraesCS6D01G108900.1	Wheat	nucleus	42.39	39.52
KXG29470	Sorghum	nucleus, plastid	41.25	35.71

Protein Annotations

EnsemblPlants:CDX71472	EnsemblPlantsGene:GSBRNA2T00148343001	GO:A0A078C3I1	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:Arsenite-R_2	InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2
PFAM:PF04959	PFAM:PF12066	ProteinID:CDX71472	ProteinID:CDX71472.1	ScanProsite:PS00028	SEG:seg
UniParc:UPI0004EF1520	MapMan:15.5.15	MapMan:16.10.2.1.3	:	:	:

Description

BnaC04g17070D

Coordinates

chrLK031793:-:1200439..1204108

Molecular Weight (calculated)

78969.1 Da

IEP (calculated)

7.246

GRAVY (calculated)

-1.134

Length

703 amino acids

Sequence
(BLAST)

001: MADETLPPAD PVDVISLSPP PQQEQEMQEQ QQEEKQPRER DSRERRDEID LERPPNRRDR SPPPPPRRDY KRRPSGSPPP LYRGDRRHSP PMRRSPPPPK
101: RYRRDDNGYD ARRGGGYGPP ADRRFGYDYD REMGGRPGGY GDDRPHGRFM ARHQDWEGGR GRYGDASFSG NTQRDGLMSY KQFIQELEDD ILPSEAERRY
201: QEYKSEYITT QKRVYFNTHK EEEWLKDKYH PTNLLTVIER RNELAQKVAK DFILSLQSGN LDLGPAATAL NKAGRTSEPN SEDEAVGGGK RRPVKRESAG
301: TDVLAAPKAP SFTSDPKRIL TDIEQTQALV RKLDAEKGIK ENVLSGSETE KSGRDNVHSG STGPVIIIRG LTSVKGLEGV ELLDTLVTYL WRVHGVDYYG
401: KLETNEAKGM RHVRAEGKGS DAKGDESENK FDSHWQERLK GQDPLEGMAA KEKLEAAAIE ALDPHVRKIR DEKYGWKYGC GAKGCTKLFH AAEFVHKHLK
501: LKHAELVVDQ TAKVREELYF QNYMNDPNAP GGQPATQQPG PRDRPMMRRK PGMENRLRDD RGGRRERAYG NDRNDRSEDQ RRGDGNGPVD PNPEEGGGFD
601: AFGGGQGGFQ VPSYSADINA PPMLMPVPGA GPLGPFVPAP PEVAMQMFRD PSGPNPSFEG GGRGGPAPFL LSPAFRQDPR RLRSYQDLDA PEEEVTVIDY
701: RSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.