Factsheet for Zm00001d031542_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005065_P002
Zm00001d017373_P001
Zm00001d029743_P001
Zm00001d051242_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	Zm00001d005065_P002	AT1G09700.1	23141542
AT2G27100.1	Zm00001d017373_P001	AT4G21670.1	23141542
AT2G27100.1	Zm00001d029743_P001	AT4G21670.1	23141542
AT2G27100.1	Zm00001d051242_P002	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d046965_P001	Maize	nucleus	38.32	92.09
EES15338	Sorghum	nucleus	85.48	88.94
Zm00001d049767_P001	Maize	extracellular, nucleus	80.54	85.67
Zm00001d006696_P001	Maize	nucleus	30.24	85.23
HORVU7Hr1G052570.1	Barley	nucleus	61.53	77.99
HORVU0Hr1G020790.1	Barley	nucleus	50.45	75.73
Os08t0517300-01	Rice	plastid	71.11	73.42
TraesCS7B01G150500.1	Wheat	nucleus	70.06	72.78
TraesCS7A01G254300.1	Wheat	nucleus	69.16	71.85
TraesCS7D01G252800.1	Wheat	nucleus	69.16	71.85
Zm00001d046814_P001	Maize	cytosol	17.81	63.98
VIT_00s0220g00050.t01	Wine grape	cytosol	4.64	63.27
VIT_13s0047g00310.t01	Wine grape	nucleus	47.9	54.61
Zm00001d036495_P001	Maize	nucleus	52.84	48.89
Zm00001d014655_P001	Maize	nucleus, plastid	54.04	48.65
Zm00001d047626_P001	Maize	cytosol	7.78	47.71
Bra034322.1-P	Field mustard	nucleus	48.8	47.11
CDX77068	Canola	nucleus	48.5	46.96
KRH56284	Soybean	endoplasmic reticulum	49.85	46.64
VIT_06s0009g01570.t01	Wine grape	nucleus	50.9	46.26
CDX71472	Canola	nucleus	48.65	46.23
KRH44717	Soybean	nucleus	49.55	46.16
KRH62750	Soybean	nucleus	48.8	45.85
AT2G27100.1	Thale cress	nucleus	49.4	45.83
Solyc01g009090.2.1	Tomato	nucleus	51.2	45.72
Bra012034.1-P	Field mustard	nucleus	48.5	45.63
CDY04478	Canola	nucleus	48.35	45.49
Zm00001d018785_P001	Maize	cytosol	15.87	38.55

Protein Annotations

EnsemblPlants:Zm00001d031542_P001	EnsemblPlants:Zm00001d031542_T001	EnsemblPlantsGene:Zm00001d031542	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:Arsenite-R_2	InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	ncoils:Coil	PANTHER:PTHR13165
PANTHER:PTHR13165:SF2	PFAM:PF04959	PFAM:PF12066	ProteinID:ONM03103.1	ScanProsite:PS00028	SEG:seg
UniParc:UPI000844DCE7	UniProt:A0A1D6KJI7	MapMan:15.5.15	MapMan:16.10.2.1.3	:	:

Description

Serrate RNA effector molecule

Coordinates

chr1:+:193753195..193766058

Molecular Weight (calculated)

72780.1 Da

IEP (calculated)

8.760

GRAVY (calculated)

-0.884

Length

668 amino acids

Sequence
(BLAST)

001: MAEAADASPP PPTVGRGDRK RGRASPVLPP PPPGPPPPGP HKKRREEGGG GFDRRRLGPV GGGGHEQDDR RYGNGLGGVG GRGGDGQYTN RAPDWSDSGR
101: GGWNEGPGNS RREGLMSYKQ FIQELEDDVS PVEAQSRYEG YKSEYITTQK KAYFDLHKNE DWLRNKYHPT NLENVIERRN ELARTTANDF FLKLQSGDLD
201: IGPGLTGSAV SKSGNNSSKN LDAVEGDGKK GKHGKGSDDS YYAASKAHPV SSEVRRIRID IEQAQVLIRK LDSEKGIENN VLSSSDHEKS DRDKSHGSVG
301: PIVIIQGSST VKGLEGAELL DTLVTYLWRI HGVDYYGMSE TNEPKGLRHV KADARTYNGA SSNGAEWENK LDSFWQDRIQ GQDPLEMLKG KEKIDGAATE
401: VLDPYVRKIR DEKYGWKYGC GAKGCTKLFH AAEFVQKHLK LKHADLVVDL TSKVREDIYF ENYMNDPKAP GGTPIMQQPA PRGKGRQRPP IESRLRDERG
501: NHRFDRNVDS PKRDGSGENP DDPIYDSFGD PAMHGAFPPD IPAPPVLMPV PGAGPLGPFI PAPPEVAMHM LRDQGAPPPI EPTGGPHPRK AGTGGGPSMR
601: GPSPIFGAPS PHHMHDPRRI RSNRCGIHSA AAVASLYNPS SRRSFGCAAI STDTAICSPS RSQVSTMF

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.