Factsheet for Zm00001d014655_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

plastid 5
nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus, plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005065_P002
Zm00001d017373_P001
Zm00001d029743_P001
Zm00001d051242_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	Zm00001d005065_P002	AT1G09700.1	23141542
AT2G27100.1	Zm00001d017373_P001	AT4G21670.1	23141542
AT2G27100.1	Zm00001d029743_P001	AT4G21670.1	23141542
AT2G27100.1	Zm00001d051242_P002	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90312	Sorghum	nucleus	87.87	91.44
Zm00001d036495_P001	Maize	nucleus	88.27	90.72
Zm00001d047626_P001	Maize	cytosol	11.73	79.82
Os06t0698859-01	Rice	nucleus	77.09	79.11
TraesCS7B01G323700.2	Wheat	nucleus	71.29	75.57
HORVU7Hr1G097860.2	Barley	plastid	69.54	74.46
TraesCS7A01G423200.1	Wheat	nucleus	70.22	74.43
TraesCS7D01G416100.1	Wheat	nucleus	70.08	74.29
VIT_00s0220g00050.t01	Wine grape	cytosol	4.04	61.22
VIT_13s0047g00310.t01	Wine grape	nucleus	47.98	60.75
Zm00001d049767_P001	Maize	extracellular, nucleus	48.38	57.17
VIT_06s0009g01570.t01	Wine grape	nucleus	55.66	56.19
Zm00001d046965_P001	Maize	nucleus	21.02	56.12
KRH56284	Soybean	endoplasmic reticulum	53.1	55.18
AT2G27100.1	Thale cress	nucleus	53.23	54.86
Bra034322.1-P	Field mustard	nucleus	51.08	54.77
KRH44717	Soybean	nucleus	52.56	54.39
CDX77068	Canola	nucleus	50.54	54.35
CDX71472	Canola	nucleus	51.48	54.34
Zm00001d031542_P001	Maize	nucleus	48.65	54.04
KRH62750	Soybean	nucleus	51.75	54.01
Bra012034.1-P	Field mustard	nucleus	51.62	53.94
Solyc01g009090.2.1	Tomato	nucleus	54.31	53.88
CDY04478	Canola	nucleus	51.48	53.8
Zm00001d006696_P001	Maize	nucleus	16.85	52.74
Zm00001d018785_P001	Maize	cytosol	18.6	50.18
Zm00001d046814_P001	Maize	cytosol	10.78	43.01

Protein Annotations

EntrezGene:100279372	MapMan:15.5.15	MapMan:16.10.2.1.3	ProteinID:AQK66726.1	ProteinID:AQK66727.1	InterPro:Arsenite-R_2
UniProt:B7ZXU2	EMBL:BT054134	InterPro:DUF3546	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:IPR013087	PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2
UniParc:UPI00019170E6	EnsemblPlantsGene:Zm00001d014655	EnsemblPlants:Zm00001d014655_P001	EnsemblPlants:Zm00001d014655_T001	InterPro:Znf_C2H2_type	SEG:seg

Description

Serrate RNA effector molecule

Coordinates

chr5:-:57566269..57574167

Molecular Weight (calculated)

82187.2 Da

IEP (calculated)

9.398

GRAVY (calculated)

-0.991

Length

742 amino acids

Sequence
(BLAST)

001: MMLPSSTISC ISPRRLPSPI TRSNPSPTAR MADVLDPASD APRARRPPPP PPDSPEDRSP QLPPPPPGGP PAASRKRSRS PPPPPPPPLG SSRPQRYRDH
101: RSGGGRGGSS PSPPPYRGSR RHSPSRRSPS PPFKRSRRDD GYDRRGGRGS PPRYGYDDRR RGYDHERGGG RGGYEDDRNQ GRYLNRAPDW PDSGYGAAND
201: GPGVTQREGL MTYKQFMQVL EDDISPSEAE RRYQEYRTEY ITTQKRAYFD LHKNEDWLKD KYHPTNLLSV IERRNERCKV IAKDFFLDLQ NGTLDLGPGI
301: TAGAASKLGG SDGNSEDDMD NDKRRKHGKD SSKATDSLSG APKAHPVSSE SRRVQADIEQ TLALVRKLDA EKGIDGNVLS SGDHDKSDVD KSHIGSMGPI
401: VIIRGLTTVK GLEGVELLDT ILTYLWRIHG VDYYGTSESH EAKGLRHVRV DSKTSSTSDV SSADWEKKLD TFWQERLNGQ DQLVILTAKD KIDAAAAEVL
501: EPLVRKIRDE KYGWKYGCGA KGCTKLFHAP EFVHKHLKLK HPDLVLESTS KVREDLYFQN YMNDPNAPGG TPVMQQSAPD RGRRRPSMDS RLKFDRGSNR
601: DHDKADRDGV RYGRGDHSPS RDGPDDQMFD GFRGRPSNAP FVAEFPAPPI LMPVPGAGPL GPFVPAPPEI AMHMLREQGP PPPFEPNGAP HGNAGMLGPM
701: MGGPAPIIAM PPNFRHDPRR LRSYNDLDAP DEEVTVLDYR SL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.