Factsheet for Os06t0698859-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0639000-01
Os04t0529500-02
Os05t0307400-01
Os11t0109900-01
Os12t0109900-02

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	Os05t0307400-01	AT1G09700.1	23141542
AT2G27100.1	Os11t0109900-01	AT1G09700.1	23141542
AT2G27100.1	Os12t0109900-02	AT1G09700.1	23141542
AT2G27100.1	Os02t0639000-01	AT4G21670.1	23141542
AT2G27100.1	Os04t0529500-02	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90312	Sorghum	nucleus	78.98	80.08
Zm00001d036495_P001	Maize	nucleus	78.42	78.53
Zm00001d014655_P001	Maize	nucleus, plastid	79.11	77.09
HORVU7Hr1G097860.2	Barley	plastid	71.65	74.75
TraesCS7B01G323700.2	Wheat	nucleus	72.34	74.71
TraesCS7D01G416100.1	Wheat	nucleus	72.06	74.43
TraesCS7A01G423200.1	Wheat	nucleus	72.06	74.43
VIT_13s0047g00310.t01	Wine grape	nucleus	50.21	61.95
VIT_00s0220g00050.t01	Wine grape	cytosol	4.15	61.22
Os08t0517300-01	Rice	plastid	50.62	56.57
VIT_06s0009g01570.t01	Wine grape	nucleus	57.4	56.46
KRH56284	Soybean	endoplasmic reticulum	54.5	55.18
Os02t0149600-01	Rice	nucleus	49.79	54.05
KRH62750	Soybean	nucleus	52.97	53.87
KRH44717	Soybean	nucleus	53.39	53.84
Bra034322.1-P	Field mustard	nucleus	51.45	53.76
AT2G27100.1	Thale cress	nucleus	53.53	53.75
Solyc01g009090.2.1	Tomato	nucleus	55.46	53.61
CDX77068	Canola	nucleus	50.76	53.19
CDX71472	Canola	nucleus	51.18	52.63
Bra012034.1-P	Field mustard	nucleus	51.31	52.25
CDY04478	Canola	nucleus	51.18	52.11
GSMUA_Achr5P22680_001	Banana	extracellular	11.76	44.04
Os06t0698900-01	Rice	nucleus	7.33	18.15

Protein Annotations

MapMan:15.5.15	MapMan:16.10.2.1.3	InterPro:Arsenite-R_2	ProteinID:BAD54671.1	ProteinID:BAH93707.1	ProteinID:BAS99319.1
InterPro:DUF3546	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0043531
InterPro:IPR013087	EnsemblPlantsGene:Os06g0698859	EnsemblPlants:Os06t0698859-01	PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028
PANTHER:PTHR13165	PANTHER:PTHR13165:SF2	UniProt:Q5Z4U6	UniParc:UPI00004470C0	InterPro:Znf_C2H2_type	SEG:seg

Description

Similar to C2H2 zinc-finger protein SERRATE (Fragment). (Os06t0698859-01)

Coordinates

chr6:-:29357590..29364555

Molecular Weight (calculated)

79915.3 Da

IEP (calculated)

9.164

GRAVY (calculated)

-1.013

Length

723 amino acids

Sequence
(BLAST)

001: MADVIDPAST EAPRARRPPP PPPDSPEGRS PPLPPPPPGG PPQPAATRKR SRSPPPPPPP PSLPPPPPLG SSRPERYRDN HHRGGGGGRG GGSSSPPPYR
101: SGRRHSPSRR SPSPPFKRSR RDDGYDRRGG RGSPPPRYGY GDRRYGYDHE RGGGRGGYDD DRYHGRYQNR AADWADSGFG ASNDGPGITQ REGLMTYKQF
201: IQVLEDDISP AEAEKRYQEY RTEYITTQKR AYFDLNKNDD RLKDKYHPTN LSSVIDRRND SCKATAKDFF HDLQNGTLDL GPGITAAAAS GSDGNSDDDG
301: DSDKRRKHGR GSSKETDPLS GAPVAHPVSS ESRRVQVDIE QALALVRKLD TEKGIVGNIL SSGDHDKSDV DKSHIGSMGP IIIIRGLTTV KGLEGVELLD
401: TLLTYLWRIH GVDYYGMSET NEAKGSRHVR ADNKTSNTTN INAADWEKKV DTFWQERLRG QDPMVILAAK DKIDAAAVEV LEPYVRKIRD EKYGWKYGCG
501: AKGCTKLFHA PEFVHKHLRL KHPELVLELT SKVREDLYFQ NYMNDPNAPG GTPVMQQSAP DKSRQRPGMD NRLRYDRANR REYDRAERDG SRYGRGDRSP
601: SLDGADDQMF DAFRGRGPNA PFVPELPAPP ILMPIPGAGP LGPFVPAPPE IAMHMLREQG PPPPFEPNGP PHANPGVLGP MMGGPAPIIT MPPSFRQDPR
701: RLRSYNDLDA PDEEVTVLDY RSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.