Factsheet for Zm00001d036495_P001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d005065_P002
Zm00001d017373_P001
Zm00001d029743_P001
Zm00001d051242_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	Zm00001d005065_P002	AT1G09700.1	23141542
AT2G27100.1	Zm00001d017373_P001	AT4G21670.1	23141542
AT2G27100.1	Zm00001d029743_P001	AT4G21670.1	23141542
AT2G27100.1	Zm00001d051242_P002	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER90312	Sorghum	nucleus	90.03	91.16
Zm00001d014655_P001	Maize	nucleus, plastid	90.72	88.27
Zm00001d047626_P001	Maize	cytosol	12.05	79.82
Os06t0698859-01	Rice	nucleus	78.53	78.42
TraesCS7B01G323700.2	Wheat	nucleus	72.02	74.29
HORVU7Hr1G097860.2	Barley	plastid	70.08	73.02
TraesCS7A01G423200.1	Wheat	nucleus	70.5	72.71
TraesCS7D01G416100.1	Wheat	nucleus	70.36	72.57
VIT_00s0220g00050.t01	Wine grape	cytosol	4.29	63.27
VIT_13s0047g00310.t01	Wine grape	nucleus	49.86	61.43
VIT_06s0009g01570.t01	Wine grape	nucleus	57.48	56.46
Zm00001d046965_P001	Maize	nucleus	21.61	56.12
Zm00001d049767_P001	Maize	extracellular, nucleus	48.48	55.73
KRH56284	Soybean	endoplasmic reticulum	53.6	54.2
AT2G27100.1	Thale cress	nucleus	53.74	53.89
Solyc01g009090.2.1	Tomato	nucleus	55.82	53.88
Bra034322.1-P	Field mustard	nucleus	51.38	53.61
KRH44717	Soybean	nucleus	52.91	53.28
CDX77068	Canola	nucleus	50.69	53.04
KRH62750	Soybean	nucleus	52.08	52.88
Zm00001d031542_P001	Maize	nucleus	48.89	52.84
CDX71472	Canola	nucleus	51.38	52.77
Zm00001d006696_P001	Maize	nucleus	17.31	52.74
Bra012034.1-P	Field mustard	nucleus	51.52	52.39
CDY04478	Canola	nucleus	51.38	52.25
Zm00001d018785_P001	Maize	cytosol	19.25	50.55
Zm00001d046814_P001	Maize	cytosol	11.08	43.01

Protein Annotations

EnsemblPlants:Zm00001d036495_P001	EnsemblPlants:Zm00001d036495_T001	EnsemblPlantsGene:Zm00001d036495	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
InterPro:Arsenite-R_2	InterPro:DUF3546	InterPro:IPR013087	InterPro:Znf_C2H2_type	PANTHER:PTHR13165	PANTHER:PTHR13165:SF2
PFAM:PF04959	PFAM:PF12066	ProteinID:AQK81172.1	ScanProsite:PS00028	SEG:seg	UniParc:UPI000843EA16
UniProt:A0A1D6LNQ7	MapMan:15.5.15	MapMan:16.10.2.1.3	:	:	:

Description

Putative SERRATE-related C2H2 zinc-finger family protein

Coordinates

chr6:+:90589306..90596258

Molecular Weight (calculated)

80388.2 Da

IEP (calculated)

9.198

GRAVY (calculated)

-0.981

Length

722 amino acids

Sequence
(BLAST)

001: MADVLEPASD APRVRRPPPP PPDSPEDRSP RLPPPPPGGP PAPSRKRSRS PPPPPPLGSS RPQRYRDHRG GGGRGGSSPS PPPYRGSRRH SPPRRSPSPP
101: FKRSRRDDGY DRRGGRGSPP RYGYDDRRRG YDHDRGGGRG GYDDDRNHGR YLNRGPDWPD SGYGAANDGP GVTQREGLMT YKQFMLVLED DISPSEAERR
201: YQEYRTEYIT TQKRAYFDLH KNEDWLKDKY HPTNLLSVIE RRNERCKVIA KDFFLDLQNG TLDLGPGITG GAASKPGGSD GNSDDDTDND KRRKHGKDSS
301: KGTDSISGAL KAHPVSSESR RVQADIEQTL ALVRKLDSEK GIEENVLSSG DHDKSDVDKS HIGSMGPIII IRGLTTVKGL EGVELLDTIL TYLWRIHGVD
401: YYGTSESHEA KGLRHVRVDS KTSSTSDVSA ADWEKKLDTF WQERLNGQDP LVILTAKDKI DAAAAEVLEP LVRKIRDEKY GWKYGCGAKG CTKLFHAPEF
501: VHKHLRLKHP DLVLESTSKV REDLYFQNYM KDPNAPGGTP VMQLSAPDRG RRRPSMDSRL KFDRGSNKEH DKAERDGGRY GRDDHSPSRD GPDDQMFDGF
601: RGRPSNAPFV AEFPPPPILM PVPGAGPLGP FVPAPPEIAM HMLREQGPPP PFEPNGAPHG STGMLGPMLG GSAPIIAMPP NFRHDPRRLR RFIPQFLNLF
701: FLIYNDLDAP DEEVTVLDYR SL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.