CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH50009
KRH52961
KRH62246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G27100.1	KRH52961	AT1G09700.1	23141542
AT2G27100.1	KRH62246	AT1G09700.1	23141542
AT2G27100.1	KRH10835	AT4G21670.1	23141542
AT2G27100.1	KRH20483	AT4G21670.1	23141542
AT2G27100.1	KRH21480	AT4G21670.1	23141542
AT2G27100.1	KRH50009	AT4G21670.1	23141542

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56284	Soybean	endoplasmic reticulum	79.78	80.11
KRH62750	Soybean	nucleus	76.85	77.5
VIT_13s0047g00310.t01	Wine grape	nucleus	55.79	68.26
GSMUA_Achr7P19610_001	Banana	nucleus	50.91	67.34
GSMUA_Achr6P01800_001	Banana	nucleus	49.79	65.99
Solyc01g009090.2.1	Tomato	nucleus	63.32	60.7
GSMUA_Achr5P22670_001	Banana	endoplasmic reticulum, golgi	38.21	60.09
HORVU7Hr1G052570.1	Barley	nucleus	44.07	59.96
AT2G27100.1	Thale cress	nucleus	59.69	59.44
Bra034322.1-P	Field mustard	nucleus	56.9	58.96
CDX77068	Canola	nucleus	56.62	58.84
HORVU0Hr1G020790.1	Barley	nucleus	36.26	58.43
GSMUA_Achr10P...	Banana	nucleus	58.44	57.08
CDX71472	Canola	nucleus	55.93	57.04
Bra012034.1-P	Field mustard	nucleus	56.21	56.76
CDY04478	Canola	nucleus	56.21	56.76
HORVU7Hr1G097860.2	Barley	plastid	53.97	55.84
TraesCS7D01G416100.1	Wheat	nucleus	54.39	55.71
TraesCS7A01G423200.1	Wheat	nucleus	54.39	55.71
TraesCS7B01G323700.2	Wheat	nucleus	54.11	55.43
Zm00001d049767_P001	Maize	extracellular, nucleus	48.26	55.1
TraesCS6A01G119000.1	Wheat	nucleus	38.35	55.0
EER90312	Sorghum	nucleus	54.25	54.56
EES15338	Sorghum	nucleus	48.67	54.36
TraesCS7B01G150500.1	Wheat	nucleus	48.12	53.65
TraesCS7A01G254300.1	Wheat	nucleus	47.98	53.5
Os08t0517300-01	Rice	plastid	48.26	53.48
Os06t0698859-01	Rice	nucleus	53.84	53.39
TraesCS7D01G252800.1	Wheat	nucleus	47.84	53.34
Zm00001d047626_P001	Maize	cytosol	8.09	53.21
Zm00001d036495_P001	Maize	nucleus	53.28	52.91
Zm00001d014655_P001	Maize	nucleus, plastid	54.39	52.56
HORVU6Hr1G021620.2	Barley	nucleus	39.19	52.52
Zm00001d046965_P001	Maize	nucleus	19.8	51.08
Zm00001d031542_P001	Maize	nucleus	46.16	49.55
Zm00001d006696_P001	Maize	nucleus	16.04	48.52
Os02t0149600-01	Rice	nucleus	43.38	46.7
Zm00001d046814_P001	Maize	cytosol	11.72	45.16
GSMUA_Achr5P22680_001	Banana	extracellular	12.13	45.08
TraesCS6B01G147000.1	Wheat	nucleus	44.77	42.91
Zm00001d018785_P001	Maize	cytosol	15.9	41.45
TraesCS6D01G108900.1	Wheat	nucleus	42.96	40.85
KXG29470	Sorghum	nucleus, plastid	41.84	36.95

Protein Annotations

EntrezGene:100788714	MapMan:15.5.15	MapMan:16.10.2.1.3	EMBL:ACUP02004950	InterPro:Arsenite-R_2	InterPro:DUF3546
EnsemblPlantsGene:GLYMA_08G227300	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	InterPro:IPR013087	UniProt:K7L882
EnsemblPlants:KRH44717	ProteinID:KRH44717	ProteinID:KRH44717.1	PFAM:PF04959	PFAM:PF12066	ScanProsite:PS00028
PANTHER:PTHR13165	PANTHER:PTHR13165:SF2	UniParc:UPI0002338C59	InterPro:Znf_C2H2_type	SEG:seg	:

Description

hypothetical protein

Coordinates

chr8:+:18506705..18514468

Molecular Weight (calculated)

80710.3 Da

IEP (calculated)

8.090

GRAVY (calculated)

-1.091

Length

717 amino acids

Sequence
(BLAST)

001: MAEVMNVPPE SLDKSPSSSA PPPPPPPPPH YPPRRRDRRD DRDFDRPPNR RGDYYDRNAS SPSSPRDRDP LPPRDRDRDR DSDLKRRRSP SPPHRERRHS
101: PPRRLPPPYK RSRRGSPRGG YGPDDSRHGY DYYGGYERGM GGRGGYADEK SYGRFGPRSS GGYQNGISGI ESNRGYGDMP SGGAQREGLM SYKQFIQELE
201: DDILPAEAER RYQEYKSEYI STQKRAYFNA HKDEEWLKDK YHPTNLVTVI ERRNENARQL AKDFLLDLQS GTLELNPGLN ASISKSGQAS EPNSEEEADT
301: GGKRRRQGRG SNKENDFSAA PKAHPISTEP RRIQADVQQA QALVRKLDTE KGIEDNILCI SDHNRNDDKA HSASVAPIVI IRGLTSVKGL EGDELLDTLV
401: TYLWQIHGVD YYGMIETNEA KGFRHVRPEG TAHEVVAGKS GSEWEKKLDL FWQGRLNGQD PLEVMTAKEK IDAAAMEVLD PYVRKIRDEK YGWKYGCGAM
501: GCTKLFHATE FVLKHLKLKH PELVVEQTSK VREDLYFQNY MNDKDAPGGM PIMQQPQKGR PLKRRGLEGR LRDDRGNRRD HDQSDRMNGD RPDNSPSHEA
601: MMGNRDETMY DSYAGPGVPP FASDIPPPPV LMPVPGAGPL GPFVPAPPEV AMQMLRDQGG SSYDASGRKM HSGPPMGGGS SIIAVPPTFR PDPRRMRSYQ
701: DLDAPEDEVT VIDYRSL

Best Arabidopsis Sequence Match ( AT2G27100.1 )
(BLAST)

001: MADVNLPPSD SVDNRLPEKS TSSSPPPPPP SSSLPQQEQE QDQQQLPLRR ERDSRERRDE RDIERPPPNR RERDRSPLPP PRRDYKRRPS LSPPPPYRDR
101: RHSPPQRRSP PQKRYRRDDN GYDGRRGSPR GGYGPPDRRF GYDHGGGYDR EMGGRPGYGD ERPHGRFMGR YQDWEGGRGG YGDASNSGNP QRDGLMSYKQ
201: FIQELEDDIL PSEAERRYQE YKSEYITTQK RAFFNTHKEE DWLKNKYHPT NLLSVIERRN DLAQKVAKDF LLDLQSGTLD LGPAVTALNK SGRTSEPNSE
301: DEAAGVGKRK RHGMGGAKEN ELLSAAPKAP SFTSDPKRIL TDVEQTQALV RKLDSEKKIE ENVLQGSETE KSGREKLHSG STGPVVIIRG LTSVKGLEGV
401: ELLDTLVTYL WRVHGLDYYG KVETNEAKGL RHVRAEGKVS DAKGDENESK FDSHWQERLK GQDPLEVMAA KEKIDAAATE ALDPHVRKIR DEKYGWKYGC
501: GAKGCTKLFH AAEFVYKHLK LKHTELVTEL TTKVREELYF QNYMNDPNAP GGQPATQQSG PRDRPIRRKP SMENRLRDDR GGRRERDGRA NGNDRNDRSE
601: DQQRGDNDGG NPGEVGYDAF GGQGGVHVPP FLSDINPPPM LMPVPGAGPL GPFVPAPPEV AMQMFRDPSG PNPPFEGSGR GGPAPFLLSP AFRQDPRRLR
701: SYQDLDAPEE EVTVIDYRSL

Arabidopsis Description

SESE [Source:UniProtKB/TrEMBL;Acc:A0A178VZD4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.