Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
KRH10835 | Soybean | nucleus | 92.71 | 92.9 |
Zm00001d029743_P001 | Maize | cytosol | 9.38 | 78.26 |
KRH50009 | Soybean | nucleus | 76.25 | 76.57 |
KRH20483 | Soybean | nucleus | 75.62 | 75.62 |
GSMUA_Achr11P... | Banana | cytosol | 2.92 | 71.79 |
PGSC0003DMT400057635 | Potato | nucleus | 57.92 | 63.11 |
Solyc02g078550.2.1 | Tomato | nucleus | 62.19 | 62.58 |
VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 51.15 | 62.31 |
AT4G21670.1 | Thale cress | nucleus | 57.92 | 57.5 |
Bra020905.1-P | Field mustard | cytosol | 50.1 | 56.79 |
CDX94046 | Canola | nucleus | 56.25 | 56.78 |
CDX76438 | Canola | cytosol | 49.58 | 56.2 |
Bra038764.1-P | Field mustard | nucleus | 55.31 | 56.07 |
CDY31421 | Canola | cytosol | 48.85 | 55.97 |
CDX98696 | Canola | nucleus | 54.17 | 55.79 |
GSMUA_Achr11P... | Banana | nucleus | 53.23 | 55.12 |
GSMUA_Achr8P14120_001 | Banana | nucleus | 54.17 | 54.79 |
CDX79083 | Canola | nucleus | 48.44 | 54.13 |
HORVU6Hr1G060230.12 | Barley | nucleus | 51.67 | 53.22 |
GSMUA_Achr11P... | Banana | extracellular | 10.1 | 53.01 |
EES05486 | Sorghum | cytosol | 51.56 | 53.0 |
Os02t0639000-01 | Rice | cytosol | 51.46 | 52.55 |
TraesCS6D01G218000.3 | Wheat | nucleus | 51.35 | 52.34 |
TraesCS6A01G235300.4 | Wheat | nucleus | 51.25 | 52.28 |
TraesCS6B01G264000.3 | Wheat | nucleus | 51.25 | 52.23 |
TraesCS2A01G373400.3 | Wheat | nucleus | 51.04 | 51.69 |
HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 47.71 | 51.4 |
Os04t0529500-02 | Rice | extracellular | 49.79 | 51.23 |
Bra013546.1-P | Field mustard | nucleus | 46.77 | 51.14 |
KXG26770 | Sorghum | nucleus | 49.9 | 50.85 |
Zm00001d017373_P001 | Maize | nucleus | 50.62 | 50.52 |
TraesCS2D01G369600.4 | Wheat | nucleus | 49.69 | 50.32 |
TraesCS2B01G390500.3 | Wheat | nucleus | 49.69 | 50.26 |
Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 48.75 | 49.95 |
KRH49327 | Soybean | nucleus | 38.54 | 44.1 |
KRH00194 | Soybean | nucleus | 38.23 | 43.53 |
Protein Annotations
EntrezGene:100814542 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | UniProt:A0A0R0H1R6 | EMBL:ACUP02008356 |
InterPro:FCP1_dom | EnsemblPlantsGene:GLYMA_13G241400 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005654 |
GO:GO:0006139 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 |
GO:GO:0009987 | GO:GO:0016591 | GO:GO:0016787 | GO:GO:0019538 | GO:GO:0070940 | InterPro:HAD-like_sf |
InterPro:IPR004274 | InterPro:IPR014720 | EnsemblPlants:KRH21480 | ProteinID:KRH21480 | ProteinID:KRH21480.1 | ProteinID:KRH21481.1 |
PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SMART:SM00358 |
SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI000233AF65 | InterPro:dsRBD_dom | SEG:seg |
Description
hypothetical protein
Coordinates
chr13:-:35136960..35145802
Molecular Weight (calculated)
107200.0 Da
IEP (calculated)
6.862
GRAVY (calculated)
-0.421
Length
960 amino acids
Sequence
(BLAST)
(BLAST)
001: MPTSMVYHGE MAVGEVKIYP EENKNMDLKE IRISHFSQPS ERCPPLAVLH TITSFGICFK MESSTSQKRQ QQDALFHLHS SCIRENKTAV MPVRGEEIHL
101: VAMYSRNNDR PCFWGFIVAS GLYNSCLTML NLRCLGIVFD LDETLVVANT MRSFEDKIEV LHRKMNSEVN PQQISAMQAE IKRYLDDKNI LKEYAENDQV
201: VDNGKVIKIQ SESVPALSDS HQPIVRPLIR LQEKNIILTR INPQIRDTSV LVRLRPAWED LRSYLTARGR KRFEVFVCTM AERDYALEMW RLLDPELNLI
301: NSKELLDRIV CVKSGLKKSL FNVFQNGLCH LKMALVIDDR LKVWDEKDQP RVHVVPAFAP YYTPQAEASN AVPFLCLARN VACNVRGGFF KDFDDGLLQK
401: IPLIAYEDDI KDIPSPDVSN YLVSEDDASA SNGNKNLLLF DGMADAEVER RLKDAISASS TILALTANID PRLAFTSSLQ YTMVSSSGTV PPPTAQASVV
501: QFGNVQFPQP NTLVKPMSQV THPGLSLHSS PAREEGELPE SELDLDTRRR FLILQHGQDT RERMASEPPF PVRHPAQVSA PASSVPSRRG WFSVEEEMGP
601: QQLNLPVPKE FPVDSEPFHI EKRWPRHPSF FSKVGDSISS DRVFHESHQR LPKEVHHRDD RSRLSQSLSS YHSLPGDDIP LSGSSYSNRD FDSESGRSLF
701: HADTTAGVLQ EIALNCGTKV EFLSSLVAST ELQFSIEAWF AGKKIGEGFG RTRREAQSKA AGCSIKQLAD IYMSHAKDDS GSTYGDVSGF HGSNNDGFVS
801: SGNSLGNQLL PKEESGSFST ASESSRVSDS RLEVSKRSTD SISALKELCM MEGLAASFQS PPASASTHLT QKDEVHAQVE IDGQIFGKGF GVTWEEAKMQ
901: AAKKALGSLR TMFNQGSLKR HGSPRSMQGL ANKRLKPEYP PTLQRVPYSA RYPRNAPLVP
101: VAMYSRNNDR PCFWGFIVAS GLYNSCLTML NLRCLGIVFD LDETLVVANT MRSFEDKIEV LHRKMNSEVN PQQISAMQAE IKRYLDDKNI LKEYAENDQV
201: VDNGKVIKIQ SESVPALSDS HQPIVRPLIR LQEKNIILTR INPQIRDTSV LVRLRPAWED LRSYLTARGR KRFEVFVCTM AERDYALEMW RLLDPELNLI
301: NSKELLDRIV CVKSGLKKSL FNVFQNGLCH LKMALVIDDR LKVWDEKDQP RVHVVPAFAP YYTPQAEASN AVPFLCLARN VACNVRGGFF KDFDDGLLQK
401: IPLIAYEDDI KDIPSPDVSN YLVSEDDASA SNGNKNLLLF DGMADAEVER RLKDAISASS TILALTANID PRLAFTSSLQ YTMVSSSGTV PPPTAQASVV
501: QFGNVQFPQP NTLVKPMSQV THPGLSLHSS PAREEGELPE SELDLDTRRR FLILQHGQDT RERMASEPPF PVRHPAQVSA PASSVPSRRG WFSVEEEMGP
601: QQLNLPVPKE FPVDSEPFHI EKRWPRHPSF FSKVGDSISS DRVFHESHQR LPKEVHHRDD RSRLSQSLSS YHSLPGDDIP LSGSSYSNRD FDSESGRSLF
701: HADTTAGVLQ EIALNCGTKV EFLSSLVAST ELQFSIEAWF AGKKIGEGFG RTRREAQSKA AGCSIKQLAD IYMSHAKDDS GSTYGDVSGF HGSNNDGFVS
801: SGNSLGNQLL PKEESGSFST ASESSRVSDS RLEVSKRSTD SISALKELCM MEGLAASFQS PPASASTHLT QKDEVHAQVE IDGQIFGKGF GVTWEEAKMQ
901: AAKKALGSLR TMFNQGSLKR HGSPRSMQGL ANKRLKPEYP PTLQRVPYSA RYPRNAPLVP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.