CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	extracellular
YLoc:	extracellular

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH10835
KRH20483
KRH21480
KRH50009

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	KRH10835	AT4G21670.1	18541146
AT1G20110.1	KRH20483	AT4G21670.1	18541146
AT1G20110.1	KRH21480	AT4G21670.1	18541146
AT1G20110.1	KRH50009	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY29372	Canola	cytosol	46.58	37.13
Bra025793.1-P	Field mustard	cytosol	45.96	36.82
KRH05975	Soybean	cytosol	50.93	25.08
Zm00001d014808_P001	Maize	extracellular	49.69	21.16
KRH61022	Soybean	nucleus	57.76	17.71
Os06t0724100-01	Rice	cytosol	52.8	17.42
KRH51684	Soybean	cytosol	57.14	16.79
CDY44204	Canola	cytosol	40.37	16.67
GSMUA_Achr8P33940_001	Banana	cytosol	52.17	16.12
TraesCS7D01G528300.1	Wheat	cytosol	50.93	16.11
GSMUA_Achr1P26420_001	Banana	cytosol	50.31	16.01
OQU77119	Sorghum	cytosol	49.69	15.9
Bra016476.1-P	Field mustard	cytosol	53.42	15.55
CDY62935	Canola	cytosol	53.42	15.55
CDY54337	Canola	cytosol	52.17	15.08
Os07t0573300-01	Rice	cytosol	47.83	14.89
TraesCS2B01G223000.1	Wheat	cytosol	45.96	14.74
EER97421	Sorghum	cytosol	48.45	14.61
HORVU2Hr1G037770.2	Barley	cytosol	45.34	14.54
TraesCS2A01G184400.2	Wheat	cytosol	44.72	14.34
Zm00001d021878_P003	Maize	cytosol	47.83	14.21
TraesCS2D01G203300.1	Wheat	cytosol	44.1	14.14
AT1G20110.1	Thale cress	cytosol	52.17	13.98
CDY43412	Canola	nucleus	37.27	10.95
GSMUA_Achr1P27620_001	Banana	cytosol	4.35	5.26
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	4.97	5.16
KRH45071	Soybean	cytosol, nucleus, plastid	1.24	2.63
GSMUA_Achr1P27690_001	Banana	mitochondrion	3.11	2.49
KRH49913	Soybean	cytosol	8.7	1.12
KRH41976	Soybean	cytosol	8.7	1.12

Protein Annotations

EMBL:ACUP02009091	EnsemblPlants:KRH17455	EnsemblPlantsGene:GLYMA_14G2205002	EntrezGene:100777310	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:PTB	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	PFAM:PF08416	ProteinID:KRH17455
ProteinID:KRH17455.1	SUPFAM:SSF50729	UniParc:UPI0002968AB8	UniProt:K7M8J9	MapMan:22.5.4.3.7	:

Description

hypothetical protein

Coordinates

chr14:+:48547228..48551132

Molecular Weight (calculated)

17909.3 Da

IEP (calculated)

6.502

GRAVY (calculated)

-0.330

Length

161 amino acids

Sequence
(BLAST)

001: MITGGQSVVV MLLLPCDDGD EQGCESGVQK FRVKMLAESG GQSTVDVLCQ IGLDGIRMLD PNTSRTLRIY PIENITRCDK FDSSTFAFWS KSSVDVVEPR
101: RIRLQSNSYT TNTLLDTVTA HHTEKALAVS FENLRLTKYN LFKQENQQAA ELKCTRGPSS P

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.