CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EES05486
KXG26770

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	EES05486	AT4G21670.1	18541146
AT1G20110.1	KXG26770	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014808_P001	Maize	extracellular	66.4	88.36
Os06t0724100-01	Rice	cytosol	76.74	79.1
TraesCS7D01G528300.1	Wheat	cytosol	71.57	70.73
KRH05975	Soybean	cytosol	42.74	65.75
CDY29372	Canola	cytosol	25.84	64.36
Bra025793.1-P	Field mustard	cytosol	25.45	63.68
GSMUA_Achr1P27620_001	Banana	cytosol	16.5	62.41
GSMUA_Achr1P27690_001	Banana	mitochondrion	24.65	61.69
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	18.29	59.35
GSMUA_Achr8P33940_001	Banana	cytosol	55.07	53.17
KRH61022	Soybean	nucleus	54.87	52.57
CDY44204	Canola	cytosol	40.56	52.31
EER97421	Sorghum	cytosol	54.67	51.5
KRH51684	Soybean	cytosol	54.47	50.0
KRH17455	Soybean	extracellular	15.9	49.69
KRH45071	Soybean	cytosol, nucleus, plastid	7.16	47.37
CDY62935	Canola	cytosol	51.89	47.2
VIT_18s0001g14750.t01	Wine grape	cytosol	54.67	47.01
Bra016476.1-P	Field mustard	cytosol	51.49	46.84
CDY54337	Canola	cytosol	50.89	45.96
Solyc04g081750.2.1	Tomato	cytosol	50.5	45.12
PGSC0003DMT400025563	Potato	cytosol	49.9	44.58
AT1G20110.1	Thale cress	cytosol	52.29	43.76
GSMUA_Achr1P26420_001	Banana	cytosol	42.74	42.49
CDY43412	Canola	nucleus	32.8	30.11
CDY37424	Canola	extracellular	15.31	27.11
OQU88236	Sorghum	nucleus	12.92	6.15
EES05335	Sorghum	plastid	12.33	5.62

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	EntrezGene:8069206	UniProt:A0A1W0VV03	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455	EnsemblPlants:OQU77119	ProteinID:OQU77119	ProteinID:OQU77119.1
ProteinID:OQU77120.1	PFAM:PF01363	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064
EnsemblPlantsGene:SORBI_3010G269100	SUPFAM:SSF50729	SUPFAM:SSF57903	UniParc:UPI0001A891C9	RefSeq:XP_002437607.1	InterPro:Znf_FYVE
InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:60350750..60355553

Molecular Weight (calculated)

53736.7 Da

IEP (calculated)

7.164

GRAVY (calculated)

-0.564

Length

503 amino acids

Sequence
(BLAST)

001: MHPSSGAGDY APYYPPYPSP ASAPPPAAAY PSVSAPASAP PYSSYPADFA PVPSYPAYPP ADLSHYAPPA TAPAPAPPQP YYPYEPAPPL PHNPVPPYPS
101: LDRAGTYGYG SGPGSGYGQE LYPPKPAGGG GGGWSDDGAY AYDGGDAPEP YGARGTAPRL GSGSALFDDY GRSIGSAADR GGGRGGSAAS PKVVRAVPKA
201: ETSEDVRGGV QKFRVKLLPE GAGSPMDVLC QVGLDGIRML DPNTGRTLRI YPLETVTRWD VLDSSIFAFW SKSSVDVEAK RIRLKSNSYT SNTILDTVTA
301: ATVQFKEMGG SSISRSRAIA DAAKPAEQQN ERKKNFLDWR NLMKPMNEEK DHWVPDEAVS KCTACAADFS AFNRRHHCRN CGDIFCDKCT QGRTPLNTDA
401: DAQPVRVCDR CMAEVTQRLN NAREVTNRPI VQSHEDLAKK LQEAMDINKR SSSGTRSSDA SGKRMREVAC PICTVHLQVE VPTSGSETIE CGVCQHPFLV
501: SAR

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.