Factsheet for TraesCS7D01G528300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	secretory

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G373400.3
TraesCS2B01G390500.3
TraesCS2D01G369600.4
TraesCS6A01G235300.4
TraesCS6B01G264000.3
TraesCS6D01G218000.3

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	TraesCS2A01G373400.3	AT4G21670.1	18541146
AT1G20110.1	TraesCS2B01G390500.3	AT4G21670.1	18541146
AT1G20110.1	TraesCS2D01G369600.4	AT4G21670.1	18541146
AT1G20110.1	TraesCS6A01G235300.4	AT4G21670.1	18541146
AT1G20110.1	TraesCS6B01G264000.3	AT4G21670.1	18541146
AT1G20110.1	TraesCS6D01G218000.3	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os06t0724100-01	Rice	cytosol	69.74	72.75
OQU77119	Sorghum	cytosol	70.73	71.57
KRH05975	Soybean	cytosol	41.65	64.83
Zm00001d014808_P001	Maize	extracellular	48.13	64.81
CDY29372	Canola	cytosol	24.16	60.89
Bra025793.1-P	Field mustard	cytosol	23.77	60.2
GSMUA_Achr1P27690_001	Banana	mitochondrion	23.58	59.7
GSMUA_Achr1P27620_001	Banana	cytosol	15.52	59.4
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	17.49	57.42
TraesCS2D01G203300.1	Wheat	cytosol	52.26	52.99
GSMUA_Achr8P33940_001	Banana	cytosol	52.26	51.06
KRH17455	Soybean	extracellular	16.11	50.93
KRH61022	Soybean	nucleus	50.69	49.14
CDY44204	Canola	cytosol	37.52	48.97
KRH51684	Soybean	cytosol	50.69	47.08
Bra016476.1-P	Field mustard	cytosol	50.1	46.11
KRH45071	Soybean	cytosol, nucleus, plastid	6.88	46.05
CDY62935	Canola	cytosol	49.9	45.93
VIT_18s0001g14750.t01	Wine grape	cytosol	51.67	44.96
CDY54337	Canola	cytosol	49.12	44.88
Solyc04g081750.2.1	Tomato	cytosol	48.33	43.69
PGSC0003DMT400025563	Potato	cytosol	48.13	43.52
AT1G20110.1	Thale cress	cytosol	48.92	41.43
GSMUA_Achr1P26420_001	Banana	cytosol	39.1	39.33
CDY37424	Canola	extracellular	15.72	28.17
CDY43412	Canola	nucleus	29.86	27.74
TraesCS5D01G485400.1	Wheat	cytosol, plastid	10.81	5.04

Protein Annotations

EnsemblPlants:TraesCS7D01G528300.1	EnsemblPlantsGene:TraesCS7D01G528300	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872
InterPro:IPR013083	InterPro:IPR017455	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD
PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	PFAM:PF01363	PFscan:PS50178	SEG:seg	SMART:SM00064
SUPFAM:SSF50729	SUPFAM:SSF57903	TIGR:cd00934	MapMan:22.5.4.3.7	:	:

Description

No Description!

Coordinates

chr7D:+:623526542..623530969

Molecular Weight (calculated)

48868.8 Da

IEP (calculated)

7.968

GRAVY (calculated)

-0.560

Length

509 amino acids

Sequence
(BLAST)

001: MHPAGAGDYS APSYYPPYPA PASXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXAAAPS PPQPYYPYEP PPPPSPPQHH
101: APSAYPSLDR AGSYGGGYGS GSYGQQDQLY PPAAAAGGWS DDGAYAYRGG DAPEPYGARG TAPRQGSGNA ALFDDYGRSI GPGKDRGGGG GGGAASPKVV
201: RAVPKAETSE DVRGGVQKFR VKLLPEGAGS PMDVLCQVGL DGIRMLDPNT SRTLRIYPLE TVTRWDVLDS SVFAFWSKSS VDLEARRIRL KSSSYTTNTI
301: LDTVTAASVQ FKEMASSVSR SKAAADPASP SEQQNEKRRN FLDWRNLVKP VTEEKDHWVP DEAVNKCTAC AGDFSAFNRR HHCRNCGDIF CDKCTQGRTP
401: LTSDADSQPV RVCDRCMAEV SRRLSSAKEA ANRPVVQSHE DLAKKLQEAM DINKKSSSGS RSSDGSSGKR MREVACPICT VHLQVQVPAS GSETIECGVC
501: QHPFLVSSR

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.