Factsheet for VIT_18s0001g14750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0370g00040.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	VIT_00s0370g00040.t01	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH05975	Soybean	cytosol	42.22	75.54
Bra025793.1-P	Field mustard	cytosol	24.27	70.65
KRH61022	Soybean	nucleus	61.88	68.95
KRH45071	Soybean	cytosol, nucleus, plastid	8.89	68.42
GSMUA_Achr1P27690_001	Banana	mitochondrion	23.42	68.16
KRH51684	Soybean	cytosol	62.22	66.42
GSMUA_Achr1P27620_001	Banana	cytosol	15.04	66.17
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	17.09	64.52
GSMUA_Achr8P33940_001	Banana	cytosol	53.33	59.88
AT1G20110.1	Thale cress	cytosol	60.34	58.74
Solyc04g081750.2.1	Tomato	cytosol	55.21	57.37
Os06t0724100-01	Rice	cytosol	47.69	57.17
VIT_04s0023g03900.t01	Wine grape	cytosol	19.83	57.14
PGSC0003DMT400025563	Potato	cytosol	54.87	57.02
Bra016476.1-P	Field mustard	cytosol	51.97	54.97
OQU77119	Sorghum	cytosol	47.01	54.67
TraesCS2B01G223000.1	Wheat	cytosol	45.3	52.79
TraesCS2D01G203300.1	Wheat	cytosol	44.44	51.79
TraesCS7D01G528300.1	Wheat	cytosol	44.96	51.67
HORVU2Hr1G037770.2	Barley	cytosol	44.27	51.59
TraesCS2A01G184400.2	Wheat	cytosol	44.27	51.59
Os07t0573300-01	Rice	cytosol	45.47	51.45
EER97421	Sorghum	cytosol	46.5	50.94
Zm00001d021878_P003	Maize	cytosol	45.47	49.08
Zm00001d014808_P001	Maize	extracellular	30.94	47.88
GSMUA_Achr1P26420_001	Banana	cytosol	40.68	47.04
VIT_04s0023g03920.t01	Wine grape	nucleus	26.32	42.9
CDY37424	Canola	extracellular	14.87	30.63
VIT_00s0361g00110.t01	Wine grape	nucleus	2.22	7.98
VIT_00s0847g00010.t01	Wine grape	nucleus	4.96	6.97
VIT_00s0372g00010.t01	Wine grape	mitochondrion, nucleus	5.98	5.51
VIT_00s0361g00100.t01	Wine grape	cytosol	9.91	5.18

Protein Annotations

EntrezGene:100259195	wikigene:100259195	MapMan:22.5.4.3.7	Gene3D:3.30.40.10	EMBL:AM443219	ProteinID:CAN63053
ProteinID:CAN63053.1	ProteinID:CCB46061	ProteinID:CCB46061.1	ncoils:Coil	UniProt:F6GZS4	EMBL:FN595227
GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455	EntrezGene:LOC100259195
wikigene:LOC100259195	PFAM:PF01363	PRINTS:PR01217	PFscan:PS50178	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473
SMART:SM00064	SUPFAM:SSF57903	UniParc:UPI0001985104	ArrayExpress:VIT_18s0001g14750	EnsemblPlantsGene:VIT_18s0001g14750	EnsemblPlants:VIT_18s0001g14750.t01
unigene:Vvi.8546	RefSeq:XP_002271105	RefSeq:XP_002271105.1	InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD
InterPro:Znf_RING/FYVE/PHD	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr18:+:12787199..12809768

Molecular Weight (calculated)

64244.2 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.793

Length

585 amino acids

Sequence
(BLAST)

001: MQQGDYNSVS YYQYQHPQNP NPNPIPNPNS IPIDPQPNPS PSTYASAPPF TTSYSPSDYS VYTPAYPPYP QNPEPVPNIP PTAPSYSPSP NLQSFNPSPQ
101: PSSFPPFEAQ GSYQPPAQQP PYHPQYDQHL TAPNFSNPIP NSNANPSYAN PPAYSASYSH VGSSVPPVYE NPYETTPKFD QTGGYFDETS GRYGGYSRTR
201: SDLGSEMYSK RSDSGVSSRY DLGSIRDDGY GDGVYAYEGS KVEPYGARGT APKSSTWVGF DDYGRSISFP SGKDQPSAKI VRAVPKAETQ QDVKSGVQKF
301: RVKLLSEGGG QSSMDVLCQI GLDGIRMLEP STSRTLRIYP LETITRCEVT DSSTFAFWSK SSVDIEPRRI RLQSNSYTTN TILDTVTAAT VQIKEMGGRS
401: RPSESLKTTE QPTEKKKGFA DWMNIIKPGN EEKDHWVPDE AVTKCTACGT DFGAFVRRHH CRNCGDIFCD KCTHGRIALT ADESAQPVRV CDRCMAEVTQ
501: RLSNAKEAAN KPALQSHEDL ARKLQEEMER NRKASSGSKS DGSGKRMKEV ACPICTVHLQ VQVPSSGSET IECGVCQHPF LVSAH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.