CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 21132161
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51684	Soybean	cytosol	84.0	80.47
KRH05975	Soybean	cytosol	49.14	78.9
KRH45071	Soybean	cytosol, nucleus, plastid	10.86	75.0
GSMUA_Achr1P27690_001	Banana	mitochondrion	27.24	71.14
GSMUA_Achr1P27620_001	Banana	cytosol	17.9	70.68
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	20.19	68.39
VIT_18s0001g14750.t01	Wine grape	cytosol	68.95	61.88
Os06t0724100-01	Rice	cytosol	54.67	58.81
GSMUA_Achr8P33940_001	Banana	cytosol	57.71	58.16
KRH17455	Soybean	extracellular	17.71	57.76
Solyc04g081750.2.1	Tomato	cytosol	61.14	57.02
PGSC0003DMT400025563	Potato	cytosol	60.19	56.13
OQU77119	Sorghum	cytosol	52.57	54.87
TraesCS2D01G203300.1	Wheat	cytosol	49.14	51.39
TraesCS2A01G184400.2	Wheat	cytosol	49.14	51.39
TraesCS2B01G223000.1	Wheat	cytosol	49.14	51.39
HORVU2Hr1G037770.2	Barley	cytosol	48.95	51.2
Zm00001d014808_P001	Maize	extracellular	36.57	50.79
TraesCS7D01G528300.1	Wheat	cytosol	49.14	50.69
Os07t0573300-01	Rice	cytosol	49.14	49.9
EER97421	Sorghum	cytosol	50.48	49.63
GSMUA_Achr1P26420_001	Banana	cytosol	46.1	47.83
Zm00001d021878_P003	Maize	cytosol	49.33	47.79
CDY37424	Canola	extracellular	16.19	29.93
KRH49913	Soybean	cytosol	9.9	4.15
KRH41976	Soybean	cytosol	9.71	4.06

Protein Annotations

MapMan:22.5.4.3.7	Gene3D:3.30.40.10	UniProt:A0A0R0K2N8	EMBL:ACUP02002146	EMBL:ACUP02002147	ncoils:Coil
EnsemblPlantsGene:GLYMA_04G023100	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	InterPro:IPR013083	InterPro:IPR017455
EnsemblPlants:KRH61022	ProteinID:KRH61022	ProteinID:KRH61022.1	PFAM:PF01363	PRINTS:PR01217	PFscan:PS50178
PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF57903	UniParc:UPI000233A821
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

hypothetical protein

Coordinates

chr4:-:1824669..1830529

Molecular Weight (calculated)

57615.7 Da

IEP (calculated)

6.290

GRAVY (calculated)

-0.753

Length

525 amino acids

Sequence
(BLAST)

001: MQQGDYTSAP SPYYQFPHLQ NPNPNPDPHP NNPYASAPPF TPNYAPSDYT PYPSSYPQNP DPIPPTAPSF PPSSSNPNLP PPFNPPFDSN PPYQQPQPQQ
101: PYFPPYDHHQ TPPNYAPPNT NSTPSVYNSA PYSYTGVSSV PPIPTYEPAY DAPSVGGASR YDGVADDGYG DGVYAYEGGK VEPYGARGTA PKSSTWAAFD
201: DYGRSISFPS QKESSVGGKI VKAVPKADTQ EDVKGGGVQK FRVKLLAESG GQSTMDVLCQ IGLDGIRMLD PNTSRTLRIY PLENITRCDR IDSSTFAFWS
301: KSPVDIEPRR IRLQSNSYTT NTLLDIVTAA TIQFKEMGGS RWPAEAVKPN EQPTERKKGF GDWMNLIKPA NEEKDHWVPD EAVSKCTACG TDFGAFVRRH
401: HCRNCGDIFC DKCTYGRIAL TADENAQPVR VCDRCMAEVS QRLTSAKESS SKPALQSHED LARKLQEELE RNRKTSGSKS DGSARRMKEV ACPICTVHLQ
501: VQVPSSGSET IECGVCQHPF LVSAH

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.