Factsheet for Zm00001d014808_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	plastid

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d017373_P001
Zm00001d029743_P001
Zm00001d051242_P002

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G20110.1	Zm00001d017373_P001	AT4G21670.1	18541146
AT1G20110.1	Zm00001d029743_P001	AT4G21670.1	18541146
AT1G20110.1	Zm00001d051242_P002	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU77119	Sorghum	cytosol	88.36	66.4
Os06t0724100-01	Rice	cytosol	72.75	56.35
CDY29372	Canola	cytosol	28.84	53.96
Bra025793.1-P	Field mustard	cytosol	28.31	53.23
KRH17455	Soybean	extracellular	21.16	49.69
TraesCS7D01G528300.1	Wheat	cytosol	64.81	48.13
KRH05975	Soybean	cytosol	32.01	37.0
GSMUA_Achr1P26420_001	Banana	cytosol	49.47	36.96
KRH61022	Soybean	nucleus	50.79	36.57
GSMUA_Achr8P33940_001	Banana	cytosol	48.94	35.51
KRH51684	Soybean	cytosol	49.74	34.31
Zm00001d021878_P003	Maize	cytosol	47.09	32.84
CDY62935	Canola	cytosol	47.35	32.37
Bra016476.1-P	Field mustard	cytosol	46.3	31.65
CDY54337	Canola	cytosol	46.56	31.6
GSMUA_Achr1P27620_001	Banana	cytosol	11.11	31.58
CDY44204	Canola	cytosol	32.54	31.54
Solyc04g081750.2.1	Tomato	cytosol	46.3	31.08
VIT_18s0001g14750.t01	Wine grape	cytosol	47.88	30.94
PGSC0003DMT400025563	Potato	cytosol	45.77	30.73
AT1G20110.1	Thale cress	cytosol	46.83	29.45
GSMUA_Achr1P27590_001	Banana	cytosol, nucleus, plastid	11.38	27.74
CDY43412	Canola	nucleus	30.42	20.99
GSMUA_Achr1P27690_001	Banana	mitochondrion	10.58	19.9
CDY37424	Canola	extracellular	5.03	6.69
Zm00001d017029_P001	Maize	cytosol	12.7	4.49
KRH45071	Soybean	cytosol, nucleus, plastid	0.79	3.95

Protein Annotations

EnsemblPlants:Zm00001d014808_P001	EnsemblPlants:Zm00001d014808_T001	EnsemblPlantsGene:Zm00001d014808	Gene3D:3.30.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR013083	InterPro:Znf_RING/FYVE/PHD	PANTHER:PTHR22835	PANTHER:PTHR22835:SF473	ProteinID:AQK67220.1
SEG:seg	SUPFAM:SSF50729	UniParc:UPI00084483AA	UniProt:A0A1D6GWG3	MapMan:22.5.4.3.7	:

Description

Protein FREE1

Coordinates

chr5:+:63882214..63888615

Molecular Weight (calculated)

40165.6 Da

IEP (calculated)

6.922

GRAVY (calculated)

-0.579

Length

378 amino acids

Sequence
(BLAST)

001: MHPSSGAGDY APYYPPYPSP AAPPPAAYPS VSAPASAPPY SSYPADFAPA PSYPAYPPAD LPHYAPPPAA PAPPQPYYPY EPAPAPPLPP SPHNPVPSPY
101: PSLDRAGSYG YGSGPGSGYG QELYPPKPAG GWSDDGAYAY NGGDAPEPYG SRGTAPRPGS GSALFDDYGR SIGSAADRGG RGGSAASPKV VRAVPKAETS
201: EDVRGGVQKF RVKLLPEGAG SPMDVLCQVG LDGIRMLDPN TGRTLRIYPL ETVTRCDVLD SSIFAFWSKS SVDVEGKRIR LKSNSYTSST ILDTVTAATV
301: QFKEMGESSI SRSRAIADAS KPAEQQNERK KNFLDWRNLM KPINEEKDHW VPDEAVSKCT ACAADFSAFN RRVRTVIY

Best Arabidopsis Sequence Match ( AT1G20110.1 )
(BLAST)

001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H

Arabidopsis Description

FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.