Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr8P14120_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr1P27590_001 | Banana | cytosol, nucleus, plastid | 92.48 | 79.35 |
| GSMUA_Achr1P27690_001 | Banana | mitochondrion | 80.45 | 53.23 |
| GSMUA_AchrUn_... | Banana | cytosol, nucleus, plastid | 18.8 | 28.09 |
| KRH05975 | Soybean | cytosol | 63.91 | 25.99 |
| KRH45071 | Soybean | cytosol, nucleus, plastid | 13.53 | 23.68 |
| CDY44204 | Canola | cytosol | 69.17 | 23.59 |
| Bra025793.1-P | Field mustard | cytosol | 33.08 | 21.89 |
| CDY29372 | Canola | cytosol | 33.08 | 21.78 |
| GSMUA_Achr8P33940_001 | Banana | cytosol | 79.7 | 20.35 |
| GSMUA_Achr1P26420_001 | Banana | cytosol | 69.17 | 18.18 |
| KRH61022 | Soybean | nucleus | 70.68 | 17.9 |
| Bra016476.1-P | Field mustard | cytosol | 74.44 | 17.9 |
| CDY62935 | Canola | cytosol | 74.44 | 17.9 |
| CDY54337 | Canola | cytosol | 72.18 | 17.24 |
| KRH51684 | Soybean | cytosol | 70.68 | 17.15 |
| Os06t0724100-01 | Rice | cytosol | 60.9 | 16.6 |
| OQU77119 | Sorghum | cytosol | 62.41 | 16.5 |
| TraesCS2A01G184400.2 | Wheat | cytosol | 61.65 | 16.33 |
| TraesCS2D01G203300.1 | Wheat | cytosol | 60.9 | 16.14 |
| TraesCS2B01G223000.1 | Wheat | cytosol | 60.9 | 16.14 |
| HORVU2Hr1G037770.2 | Barley | cytosol | 60.9 | 16.14 |
| AT1G20110.1 | Thale cress | cytosol | 71.43 | 15.81 |
| Os07t0573300-01 | Rice | cytosol | 60.9 | 15.67 |
| EER97421 | Sorghum | cytosol | 62.41 | 15.54 |
| TraesCS7D01G528300.1 | Wheat | cytosol | 59.4 | 15.52 |
| PGSC0003DMT400025563 | Potato | cytosol | 64.66 | 15.28 |
| Solyc04g081750.2.1 | Tomato | cytosol | 64.66 | 15.28 |
| VIT_18s0001g14750.t01 | Wine grape | cytosol | 66.17 | 15.04 |
| Zm00001d021878_P003 | Maize | cytosol | 60.15 | 14.76 |
| GSMUA_Achr7P20360_001 | Banana | extracellular | 11.28 | 14.42 |
| CDY43412 | Canola | nucleus | 48.12 | 11.68 |
| Zm00001d014808_P001 | Maize | extracellular | 31.58 | 11.11 |
| CDY37424 | Canola | extracellular | 20.3 | 9.51 |
| KRH17455 | Soybean | extracellular | 5.26 | 4.35 |
| GSMUA_Achr5P22350_001 | Banana | cytosol | 17.29 | 2.14 |
| GSMUA_Achr7P20370_001 | Banana | nucleus | 14.29 | 1.82 |
| GSMUA_Achr1P27610_001 | Banana | cytosol | 0.75 | 1.41 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr1P27620_001 | EnsemblPlants:GSMUA_Achr1T27620_001 | EnsemblPlantsGene:GSMUA_Achr1G27620_001 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR013083 | InterPro:IPR017455 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD |
| InterPro:Znf_RING/FYVE/PHD | PANTHER:PTHR22835 | PANTHER:PTHR22835:SF473 | PFAM:PF01363 | PFscan:PS50178 | SMART:SM00064 |
| SUPFAM:SSF57903 | UniParc:UPI0002964439 | UniProt:M0S3L9 | MapMan:22.5.4.3.7 | : | : |
Description
zinc finger family protein, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr1G27620_001]
Coordinates
chr1:-:24919343..24921683
Molecular Weight (calculated)
14454.8 Da
IEP (calculated)
6.492
GRAVY (calculated)
-0.665
Length
133 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGNGSLTRG EEAADASKVS DQSAERTKSL VDWMNLIKPA NGEKDHWVLD EAVSKCTSCG SDFGAFNRRH HCRNCGDNLC DKCTKGRIAL TAEENAQQVR
101: VCDRCMAEVS QRLSNAKEAV SKPAGLQSHE DLV
101: VCDRCMAEVS QRLSNAKEAV SKPAGLQSHE DLV
001: MQQGDYNSYY HHQYSQFQNP TPNPNPNPNP SPPAPATVAG PTDLTRNTYA SAPPFTGGYG SADYSNYSQN YTPYGQNSEH VPPSAPSFTS PSQPPPSPPA
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H
101: TSLNPNSYST FNQPPPPPTI HPQPLSSYGS FDSTAPYQQP TSQHMYYSPY DQHQTSGYSS APPPSSAPAP NPNPAPYSSS LYSAPPYSSG GSSIPPSYEK
201: PSVKFDQSGY DGYNRSRSDL GSDLYGKRSD SGEYPAFEDS YGDGVYAYQG GKVEPYGSRG TAPKSSNSTL FDDYGRSISF SSSGRDSSVS SNSAKIVRAV
301: PKADVQEDST GGVQKFRVKL LAETYGQTTT DVLCQIGLDG LRMLDPSTSR TLRIYPLENI TRCEKLDSSI LAFWSKTPVD IEAKRIRLQS NSYTTNTLLD
401: TVTAAMFQAK EIGGSSRPPT SGKLIEQTAE KKKGLGDWMN IIKPVNEEKD HWVPDEAVSK CTSCGSDFGA FIRRHHCRNC GDVFCDKCTQ GRIALTAEDN
501: APQVRVCDRC MAEVSQRLSN AKETTGRNVS LQSHEDLARK LQEEMERNRK SSSGLREGSG RRMKEVACPT CTVHLQVQVP VSGSETIECG VCQNPFLVSA
601: H
Arabidopsis Description
FREE1Protein FREE1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ASS2]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.