Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 6
- endoplasmic reticulum 4
- vacuole 4
- plasma membrane 4
- golgi 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 41.53 | 12.62 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 64.48 | 12.43 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 52.46 | 12.18 |
| GSMUA_Achr11P... | Banana | nucleus | 60.66 | 11.97 |
| PGSC0003DMT400057635 | Potato | nucleus | 53.01 | 11.01 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 54.64 | 10.73 |
| KRH50009 | Soybean | nucleus | 55.74 | 10.67 |
| CDY31421 | Canola | cytosol | 48.63 | 10.62 |
| Os02t0639000-01 | Rice | cytosol | 54.1 | 10.53 |
| KRH20483 | Soybean | nucleus | 55.19 | 10.52 |
| CDX76438 | Canola | cytosol | 48.63 | 10.51 |
| Bra020905.1-P | Field mustard | cytosol | 48.63 | 10.51 |
| Os04t0529500-02 | Rice | extracellular | 53.01 | 10.4 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 50.27 | 10.33 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 53.01 | 10.31 |
| TraesCS6D01G218000.3 | Wheat | nucleus | 53.01 | 10.3 |
| Zm00001d051242_P002 | Maize | cytosol, nucleus, plastid | 52.46 | 10.25 |
| KRH10835 | Soybean | nucleus | 53.55 | 10.23 |
| TraesCS6B01G264000.3 | Wheat | nucleus | 52.46 | 10.19 |
| KXG26770 | Sorghum | nucleus | 52.46 | 10.19 |
| EES05486 | Sorghum | cytosol | 51.91 | 10.17 |
| KRH21480 | Soybean | nucleus | 53.01 | 10.1 |
| Solyc02g078550.2.1 | Tomato | nucleus | 52.46 | 10.06 |
| TraesCS2A01G373400.3 | Wheat | nucleus | 51.91 | 10.02 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 51.91 | 10.02 |
| CDX98696 | Canola | nucleus | 50.82 | 9.98 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 51.37 | 9.91 |
| Zm00001d017373_P001 | Maize | nucleus | 51.37 | 9.77 |
| Bra038764.1-P | Field mustard | nucleus | 50.27 | 9.71 |
| CDX94046 | Canola | nucleus | 50.27 | 9.67 |
| CDX79083 | Canola | nucleus | 45.36 | 9.66 |
| Bra013546.1-P | Field mustard | nucleus | 44.81 | 9.34 |
| AT4G21670.1 | Thale cress | nucleus | 49.18 | 9.31 |
| GSMUA_Achr11P... | Banana | cytosol | 0.0 | 0.0 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 0.0 | 0.0 |
| Zm00001d029743_P001 | Maize | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P22090_001 | EnsemblPlants:GSMUA_Achr11T22090_001 | EnsemblPlantsGene:GSMUA_Achr11G22090_001 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0006139 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0016787 | GO:GO:0019538 | GO:GO:0070940 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF17 | SignalP:SignalP-noTM |
| UniParc:UPI0002953F3B | UniProt:M0RUD9 | MapMan:15.3.2.2 | : | : | : |
Description
RNA polymerase II C-terminal domain phosphatase-like 1 [Source:GMGC_GENE;Acc:GSMUA_Achr11G22090_001]
Coordinates
chr11:+:22489290..22490415
Molecular Weight (calculated)
20858.6 Da
IEP (calculated)
7.148
GRAVY (calculated)
0.036
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MCCSAFILVC VKFYLYTAVI PIRAKELGEK GLHLVAMASR KNPMSYACLW GFIVQSRLYE SSVMMLNLRC LGIVFDLDET LIVPNTMWSF KDQDQCSSMK
101: ISNETDPPHI TSMLAEIKHS QDDKLIMKQY ADSDQVVDNG KVFKVQSEVV LPLSDSHQLI TRPIIRLHAK YHHSDMRDTS VLV
101: ISNETDPPHI TSMLAEIKHS QDDKLIMKQY ADSDQVVDNG KVFKVQSEVV LPLSDSHQLI TRPIIRLHAK YHHSDMRDTS VLV
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.