Subcellular Localization
min:
: max
Winner_takes_all: golgi, extracellular
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- extracellular 4
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 4
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr11P... | |
| GSMUA_Achr8P14120_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os02t0516600-01 | Rice | nucleus, plastid | 49.38 | 48.39 |
| EES06877 | Sorghum | nucleus | 49.11 | 48.25 |
| TraesCS5D01G139400.2 | Wheat | plastid | 48.01 | 47.68 |
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 47.87 | 47.42 |
| KRH06829 | Soybean | nucleus | 45.54 | 47.03 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 47.6 | 47.02 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 45.82 | 45.82 |
| HORVU5Hr1G043380.1 | Barley | plastid | 46.91 | 45.66 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 48.01 | 45.1 |
| KRG94698 | Soybean | nucleus, plastid | 45.95 | 44.85 |
| CDY48977 | Canola | nucleus, plastid | 43.35 | 43.17 |
| CDY28532 | Canola | nucleus, plastid | 42.8 | 42.92 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 43.62 | 42.01 |
| CDX71433 | Canola | extracellular | 7.41 | 40.3 |
| AT3G26730.1 | Thale cress | plastid | 41.15 | 38.86 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 24.01 | 36.38 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P20560_001 | EnsemblPlants:GSMUA_Achr6T20560_001 | EnsemblPlantsGene:GSMUA_Achr6G20560_001 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | PANTHER:PTHR12983 | PFAM:PF00097 | PFscan:PS50089 | ScanProsite:PS00518 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000296C215 | UniProt:M0T8Q4 | MapMan:35.2 | : |
Description
zinc finger, C3HC4 type domain containing protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G20560_001]
Coordinates
chr6:-:15189038..15200100
Molecular Weight (calculated)
81792.7 Da
IEP (calculated)
7.390
GRAVY (calculated)
-0.484
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKWVHQWSS LLRFSFLKWF CLVPHLKIYL YSSLQVIGSR VSGTKKVSCC KKSGTAYECQ LGREEAASQF RSNQFGPSQG NERPPANAKF VHSGNLATRP
101: SGLHGNAGQS ATRRNNVINA NHLLNFYYDP ISRSEPRIPP RRQQKIKPYN KDLFLQANYK FVVLDRGGCE IKSMDPDKML HWEEVICVRY STPLLVQCPI
201: CLDTPLCPQI TSCGHIYCFP CILRYMLMGE ENHKGECWKK CPLCFTVIST KDLYTVLIEN VKQFGVGDHA HFTLLTRPKV SVFPVLKKKQ VESSTPCTTD
301: GLCDLFSKFV LTSDVELSVR EAKSDLYDWL HKADSGLVDD LEKLPYVCAA LEQLEERMKA WMEQQTDSTI PLRDHVTPSV NSKTSLSSKN RNSHALNLTS
401: NLGNAESYAY ESGIGMVCYI PDHEKTGSST GNAESYAFAD STLLPLAANS EQLENSNEVP LSHNEDESFQ QEEMTSQRNS HSCSGGTERD SYTFYQATDG
501: QHLILHPLNM KCLLHHYGSY DLLPPSISGE ILELETVTQS EAMRRRYRYL SHFSLTTTFQ LCEIDLRDLL PSSSLAPFLD EMKKREKQRH RLARKENDER
601: ARAEAASAQL NLISSAQRQL THKDVVFSSD DFEALGANIA PSSSPPTGER KLFSDVTRLG FAAAHDSPSL RAEESADVSA PRPMTTSSFA TILSSACDVE
701: SSEQQTSAQG KKGKKPNRVL LSTASSRRY
101: SGLHGNAGQS ATRRNNVINA NHLLNFYYDP ISRSEPRIPP RRQQKIKPYN KDLFLQANYK FVVLDRGGCE IKSMDPDKML HWEEVICVRY STPLLVQCPI
201: CLDTPLCPQI TSCGHIYCFP CILRYMLMGE ENHKGECWKK CPLCFTVIST KDLYTVLIEN VKQFGVGDHA HFTLLTRPKV SVFPVLKKKQ VESSTPCTTD
301: GLCDLFSKFV LTSDVELSVR EAKSDLYDWL HKADSGLVDD LEKLPYVCAA LEQLEERMKA WMEQQTDSTI PLRDHVTPSV NSKTSLSSKN RNSHALNLTS
401: NLGNAESYAY ESGIGMVCYI PDHEKTGSST GNAESYAFAD STLLPLAANS EQLENSNEVP LSHNEDESFQ QEEMTSQRNS HSCSGGTERD SYTFYQATDG
501: QHLILHPLNM KCLLHHYGSY DLLPPSISGE ILELETVTQS EAMRRRYRYL SHFSLTTTFQ LCEIDLRDLL PSSSLAPFLD EMKKREKQRH RLARKENDER
601: ARAEAASAQL NLISSAQRQL THKDVVFSSD DFEALGANIA PSSSPPTGER KLFSDVTRLG FAAAHDSPSL RAEESADVSA PRPMTTSSFA TILSSACDVE
701: SSEQQTSAQG KKGKKPNRVL LSTASSRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.