Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 5
- plastid 6
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_00s0370g00040.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26730.1 | VIT_00s0370g00040.t01 | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRG94698 | Soybean | nucleus, plastid | 57.2 | 55.82 |
| KRH06829 | Soybean | nucleus | 53.91 | 55.67 |
| CDX71433 | Canola | extracellular | 8.92 | 48.51 |
| CDY28532 | Canola | nucleus, plastid | 48.01 | 48.14 |
| CDY48977 | Canola | nucleus, plastid | 47.87 | 47.68 |
| AT3G26730.1 | Thale cress | plastid | 49.11 | 46.37 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 48.01 | 46.24 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 45.82 | 45.82 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 29.08 | 44.07 |
| Os02t0516600-01 | Rice | nucleus, plastid | 44.86 | 43.95 |
| EES06877 | Sorghum | nucleus | 43.62 | 42.86 |
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 42.8 | 42.39 |
| TraesCS5D01G139400.2 | Wheat | plastid | 42.66 | 42.37 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 42.8 | 42.28 |
| HORVU5Hr1G043380.1 | Barley | plastid | 42.52 | 41.39 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 43.35 | 40.72 |
Protein Annotations
| ArrayExpress:VIT_14s0068g01130 | EMBL:FN595232 | EnsemblPlants:VIT_14s0068g01130.t01 | EnsemblPlantsGene:VIT_14s0068g01130 | Gene3D:3.30.40.10 | InterPro:IPR001841 |
| InterPro:IPR013083 | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS | PFscan:PS50089 | ProteinID:CCB46973 |
| ProteinID:CCB46973.1 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000210A968 |
| UniProt:F6H430 | MapMan:35.2 | : | : | : | : |
Description
No Description!
Coordinates
chr14:+:24919697..24932673
Molecular Weight (calculated)
80388.7 Da
IEP (calculated)
8.126
GRAVY (calculated)
-0.531
Length
729 amino acids
Sequence
(BLAST)
(BLAST)
001: MSILPAQNQG STSSSSAAPS QNPNLDHGIL FQPHPSPLSR SPPSLPSHVQ NLASLHISDS ESSVASSEDV SGSLAPAAAD SGGSSKKVTE LGVQNSKKSL
101: PHQNTGTRSQ SRSVGRGSES TQSRGKLSGP TISPRSQQAS GSINFHGSTT HSAGRKTQMN GNHLLNFHYD PISRPQPRAP PPRRQQKIKP YNKDLFLQAN
201: YRFVVLDTGN QVPELMDPDK MLQWDDIICV RYSTPLPVQC PICLECPLCP QITSCGHIFC FPCILRYLLM GKEDHKGDCW KKCPLCFVMI SPKDLYTLYI
301: ENVKQYFHDS FSKFIFTSDV DLSVREAISD LDSWLVRADS GLVDDLEKLP YVCAAVEQLE QRKKYWNEHG TCKSTISVKY TDCQSGSHVI PSTTNVACSD
401: YEACGFKYGS PSSDVDDKSK WLGNLTPDKL DGGECLVQTA DMGETLEGQC RALSSSYDEN KSLQRHSSGS RDLKDDDSYN FYQAVDGQHL ILHPLNMKCL
501: LHHYGGYAFL PNRISGRILQ LETVTQSEAM RRRYRYLSHF SLTTTFQLCE IDLREVLPPS AFFPFMDEIK KRERQRKKLA RKDTKEKLKA EATTTDSLPI
601: PSRFGEYVYP PTFSIDDFEA LGSPVVTSTS PPTFGERKLF SNVTKLGFAA GHDSPGLKIE EVHSVHSTSM ASDSSGVTGS RNAGTPSFAN VISRGKSVES
701: LDASKTIGTG KKGKKSNQIL LSTAGGRRY
101: PHQNTGTRSQ SRSVGRGSES TQSRGKLSGP TISPRSQQAS GSINFHGSTT HSAGRKTQMN GNHLLNFHYD PISRPQPRAP PPRRQQKIKP YNKDLFLQAN
201: YRFVVLDTGN QVPELMDPDK MLQWDDIICV RYSTPLPVQC PICLECPLCP QITSCGHIFC FPCILRYLLM GKEDHKGDCW KKCPLCFVMI SPKDLYTLYI
301: ENVKQYFHDS FSKFIFTSDV DLSVREAISD LDSWLVRADS GLVDDLEKLP YVCAAVEQLE QRKKYWNEHG TCKSTISVKY TDCQSGSHVI PSTTNVACSD
401: YEACGFKYGS PSSDVDDKSK WLGNLTPDKL DGGECLVQTA DMGETLEGQC RALSSSYDEN KSLQRHSSGS RDLKDDDSYN FYQAVDGQHL ILHPLNMKCL
501: LHHYGGYAFL PNRISGRILQ LETVTQSEAM RRRYRYLSHF SLTTTFQLCE IDLREVLPPS AFFPFMDEIK KRERQRKKLA RKDTKEKLKA EATTTDSLPI
601: PSRFGEYVYP PTFSIDDFEA LGSPVVTSTS PPTFGERKLF SNVTKLGFAA GHDSPGLKIE EVHSVHSTSM ASDSSGVTGS RNAGTPSFAN VISRGKSVES
701: LDASKTIGTG KKGKKSNQIL LSTAGGRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.