Factsheet for AT3G26730.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28532	Canola	nucleus, plastid	73.06	77.58
Bra032944.1-P	Field mustard	nucleus, plastid	75.65	77.15
CDY48977	Canola	nucleus, plastid	73.06	77.05
CDX71433	Canola	extracellular	12.82	73.88
VIT_14s0068g01130.t01	Wine grape	plastid	46.37	49.11
KRH06829	Soybean	nucleus	44.43	48.58
KRG94698	Soybean	nucleus, plastid	46.11	47.66
Os02t0516600-01	Rice	nucleus, plastid	41.06	42.61
TraesCS5D01G139400.2	Wheat	plastid	40.16	42.23
TraesCS5A01G135100.1	Wheat	nucleus, plastid	40.28	42.14
TraesCS5B01G133900.2	Wheat	nucleus, plastid	39.9	41.85
EES06877	Sorghum	nucleus	40.03	41.64
GSMUA_Achr6P20560_001	Banana	extracellular, golgi	38.86	41.15
HORVU5Hr1G043380.1	Barley	plastid	39.9	41.12
Zm00001d016602_P001	Maize	nucleus, plastid	40.03	39.82
Solyc02g094510.2.1	Tomato	nucleus, plastid	23.96	38.46

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	EntrezGene:822285	ProteinID:AEE77205.1	ArrayExpress:AT3G26730	EnsemblPlantsGene:AT3G26730
RefSeq:AT3G26730	TAIR:AT3G26730	RefSeq:AT3G26730-TAIR-G	EnsemblPlants:AT3G26730.1	TAIR:AT3G26730.1	EMBL:AY074325
Unigene:At.5354	ProteinID:BAB01736.1	EMBL:BT003004	GO:GO:0003674	GO:GO:0005488	GO:GO:0008150
GO:GO:0046872	InterPro:IPR001841	InterPro:IPR013083	RefSeq:NP_189307.2	PFAM:PF00097	PO:PO:0000005
PO:PO:0000013	PO:PO:0000037	PO:PO:0000084	PO:PO:0000230	PO:PO:0000293	PO:PO:0001016
PO:PO:0001017	PO:PO:0001054	PO:PO:0001078	PO:PO:0001081	PO:PO:0001185	PO:PO:0004507
PO:PO:0007064	PO:PO:0007095	PO:PO:0007098	PO:PO:0007103	PO:PO:0007115	PO:PO:0007123
PO:PO:0007611	PO:PO:0007616	PO:PO:0008019	PO:PO:0009005	PO:PO:0009006	PO:PO:0009009
PO:PO:0009010	PO:PO:0009025	PO:PO:0009029	PO:PO:0009030	PO:PO:0009031	PO:PO:0009032
PO:PO:0009046	PO:PO:0009047	PO:PO:0009052	PO:PO:0020030	PO:PO:0020038	PO:PO:0020100
PO:PO:0020137	PO:PO:0025022	PO:PO:0025195	PO:PO:0025281	ScanProsite:PS00518	PFscan:PS50089
UniProt:Q9LSE3	SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI000000BE87	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING
InterPro:Znf_RING/FYVE/PHD	InterPro:Znf_RING_CS	SEG:seg	:	:	:

Description

Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]

Coordinates

chr3:+:9823524..9827467

Molecular Weight (calculated)

85236.9 Da

IEP (calculated)

7.381

GRAVY (calculated)

-0.730

Length

772 amino acids

Sequence
(BLAST)

001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.