CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus

Predictor Summary:

nucleus 4
plastid 5

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX76438
CDX79083
CDX94046
CDX98696
CDY31421

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G26730.1	CDX76438	AT4G21670.1	18541146
AT3G26730.1	CDX79083	AT4G21670.1	18541146
AT3G26730.1	CDX94046	AT4G21670.1	18541146
AT3G26730.1	CDX98696	AT4G21670.1	18541146
AT3G26730.1	CDY31421	AT4G21670.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY48977	Canola	nucleus, plastid	96.42	95.77
Bra032944.1-P	Field mustard	nucleus, plastid	95.74	91.94
CDX71433	Canola	extracellular	16.37	88.81
AT3G26730.1	Thale cress	plastid	77.58	73.06
KRH06829	Soybean	nucleus	47.18	48.58
KRG94698	Soybean	nucleus, plastid	49.66	48.33
VIT_14s0068g01130.t01	Wine grape	plastid	48.14	48.01
Os02t0516600-01	Rice	nucleus, plastid	44.57	43.55
TraesCS5A01G135100.1	Wheat	nucleus, plastid	43.47	42.82
GSMUA_Achr6P20560_001	Banana	extracellular, golgi	42.92	42.8
TraesCS5D01G139400.2	Wheat	plastid	43.05	42.64
TraesCS5B01G133900.2	Wheat	nucleus, plastid	43.05	42.53
EES06877	Sorghum	nucleus	42.92	42.05
HORVU5Hr1G043380.1	Barley	plastid	42.78	41.52
Zm00001d016602_P001	Maize	nucleus, plastid	42.92	40.21
Solyc02g094510.2.1	Tomato	nucleus, plastid	24.9	37.63

Protein Annotations

Gene3D:3.30.40.10	MapMan:35.2	GO:A0A078GTW8	UniProt:A0A078GTW8	EnsemblPlants:CDY28532	ProteinID:CDY28532
ProteinID:CDY28532.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005488	GO:GO:0046872	EnsemblPlantsGene:GSBRNA2T00040452001
InterPro:IPR001841	InterPro:IPR013083	PFAM:PF00097	ScanProsite:PS00518	PFscan:PS50089	PANTHER:PTHR12983
SMART:SM00184	SUPFAM:SSF57850	UniParc:UPI0004EE3672	InterPro:Znf_C3HC4_RING-type	InterPro:Znf_RING	InterPro:Znf_RING/FYVE/PHD
InterPro:Znf_RING_CS	SEG:seg	:	:	:	:

Description

BnaC02g36280DBnaC02g36280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GTW8]

Coordinates

chrLK032221:-:459748..463402

Molecular Weight (calculated)

80959.5 Da

IEP (calculated)

7.611

GRAVY (calculated)

-0.715

Length

727 amino acids

Sequence
(BLAST)

001: MSILPPTHIQ GHESSPPPSN SSLNPSSEHG NSSLVSPPPS SGIGSLSLAG SSFPTSDFSS GSREPIAAAE EEHSHGSPKE ITQIGAGKES FSPPSADRHD
101: HLRYDSRRNR SRGRNTRAAA SSSHVQQHNA TGPSNSPRGS SHHNPTGRRA NMISGNHLLN FQYDPISPQQ FRAPPPPQRR QMHRRRPYNK DLFLQANYKF
201: VVLDTGDHSP DSMDPDKMLQ WDNIICVRYS TPSPVQCPIC LEYPLCPQIT SCGHIFCFPC VLQYLLIGED NHKAECFKRC PLCFVMISPR ELYTVYIENV
301: KQYSVGDPIE FILLTRKKDS FAPTRKNEID SDVPDPFSKF TFTQDVDLSV RQAVSELDGW IARADPGLVE DLEKHLYVNA ALERLEERKL YWKEQRLSNC
401: CKSSTKPRSL VPSSSPPDVV GKSDEESQSS LEKSCDDGHS LVEKDAPLMP SSDNGSKRPL LHQNDSKDQK DNDDAYNFYQ SVDGQHIILH SLNMKCLLHH
501: YGSNDFLPTR VSGKIVEMET VTQSEAIRRR YRFLSHFSLT TTFQICEIDM RESLPPEAFA PFMDEIKKRE KQRKERARKE RKDKIKAEVA AAAELAPLMA
601: SRGQFYYGDD PSFSLDDFEA LGNSAPVVSS SPPTIGERSS FSHVTRLGFA AGHDSPNLNN EPTTNVQSSS SSSEVTNATT GARNTNTTSF ASVTSRTPTT
701: PVAIKEPGKR GKKQSRVLLS TTSVRRY

Best Arabidopsis Sequence Match ( AT3G26730.1 )
(BLAST)

001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY

Arabidopsis Description

Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.