Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 1
- cytosol 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 96.88 | 97.15 |
| TraesCS5D01G139400.2 | Wheat | plastid | 96.48 | 97.0 |
| HORVU5Hr1G043380.1 | Barley | plastid | 91.6 | 90.25 |
| Os02t0516600-01 | Rice | nucleus, plastid | 70.73 | 70.16 |
| EES06877 | Sorghum | nucleus | 68.16 | 67.79 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 68.16 | 64.82 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 47.02 | 47.6 |
| KRH06829 | Soybean | nucleus | 44.31 | 46.32 |
| KRG94698 | Soybean | nucleus, plastid | 45.53 | 44.98 |
| CDY28532 | Canola | nucleus, plastid | 42.82 | 43.47 |
| CDY48977 | Canola | nucleus, plastid | 42.95 | 43.31 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 42.28 | 42.8 |
| Bra032944.1-P | Field mustard | nucleus, plastid | 42.95 | 41.88 |
| CDX71433 | Canola | extracellular | 7.32 | 40.3 |
| AT3G26730.1 | Thale cress | plastid | 42.14 | 40.28 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 23.31 | 35.76 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G135100.1 | EnsemblPlantsGene:TraesCS5A01G135100 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 |
| InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD | InterPro:Znf_RING_CS |
| PANTHER:PTHR12983 | PFAM:PF00097 | PFscan:PS50089 | ScanProsite:PS00518 | SEG:seg | SMART:SM00184 |
| SUPFAM:SSF57850 | TIGR:cd16536 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr5A:-:305087543..305096474
Molecular Weight (calculated)
81138.6 Da
IEP (calculated)
7.338
GRAVY (calculated)
-0.480
Length
738 amino acids
Sequence
(BLAST)
(BLAST)
001: MSISPTESTR GSHPPAPRAS NPSPSPRHGT ASRRGSRSSP RASAAAPGVG RDGASNGEVS LDSVGFIGQS VDTSQAVVGF RISGQEDDPY AQEVSDVSEC
101: QSSGQGSLRL TVHSGGSVQA DVQRLELVGS LEIDHSSDGL QGNGALMASR KNQAVNANYL LNFQYDPISR PQPHGPRTYP PRRQRKIKPY NKDLFLQANF
201: KFVVLDTGNY QIDSMDPDKM LQWEDIICVR YCSPSEVRCP ICLESPLCPQ ITSCGHIYCF PCILHYLLMG KEDYRGECWK KCPLCFMMIS AKELTTIFVT
301: QLQHFHIGDN VTFALLGRSK NSLTPFLRNS PSEYSSLDED PCNVFSKFIL TSDVALSVRG AKSDLSNWLQ MADLGLVDDL EKLPYVSAAL EQLEERMKYW
401: SEFRYYSSSP LKNSSSPISS TKLKNSDNPK TSHTNSGHKL SPLSDGDIIT GVSGLSVSPL YINSKKGAPQ KMEERHAVAV DSNEQDSYTF YQVIDGQHLI
501: LHPLNMKCLL NHFGNSDMLP PRVTGKILEL ETITQSEASR KRYRFLSHFS LTTTFQFCEI DLSDMLPPIS LAPFMDEIKR REKQRMQTAK KEEKDRVKAE
601: VAAAAQESAM RFEYTNFSRT QSDVMFSLDD FEALGNNAAG PSTSPPAGER KLFSDVTRLG FASAQDSPPL RAETGDANNE ITRDQGPVSA SSVSFASILS
701: STRAAADSSV ETPKPNGVGK AGKKRTKVLL STGGGRRY
101: QSSGQGSLRL TVHSGGSVQA DVQRLELVGS LEIDHSSDGL QGNGALMASR KNQAVNANYL LNFQYDPISR PQPHGPRTYP PRRQRKIKPY NKDLFLQANF
201: KFVVLDTGNY QIDSMDPDKM LQWEDIICVR YCSPSEVRCP ICLESPLCPQ ITSCGHIYCF PCILHYLLMG KEDYRGECWK KCPLCFMMIS AKELTTIFVT
301: QLQHFHIGDN VTFALLGRSK NSLTPFLRNS PSEYSSLDED PCNVFSKFIL TSDVALSVRG AKSDLSNWLQ MADLGLVDDL EKLPYVSAAL EQLEERMKYW
401: SEFRYYSSSP LKNSSSPISS TKLKNSDNPK TSHTNSGHKL SPLSDGDIIT GVSGLSVSPL YINSKKGAPQ KMEERHAVAV DSNEQDSYTF YQVIDGQHLI
501: LHPLNMKCLL NHFGNSDMLP PRVTGKILEL ETITQSEASR KRYRFLSHFS LTTTFQFCEI DLSDMLPPIS LAPFMDEIKR REKQRMQTAK KEEKDRVKAE
601: VAAAAQESAM RFEYTNFSRT QSDVMFSLDD FEALGNNAAG PSTSPPAGER KLFSDVTRLG FASAQDSPPL RAETGDANNE ITRDQGPVSA SSVSFASILS
701: STRAAADSSV ETPKPNGVGK AGKKRTKVLL STGGGRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.