Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2D01G369600.4 | Wheat | nucleus | 95.78 | 95.78 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 95.78 | 95.68 |
| HORVU2Hr1G091030.9 | Barley | endoplasmic reticulum, vacuole | 85.55 | 91.02 |
| Os04t0529500-02 | Rice | extracellular | 73.0 | 74.17 |
| KXG26770 | Sorghum | nucleus | 73.21 | 73.67 |
| TraesCS6A01G235300.4 | Wheat | nucleus | 70.99 | 71.52 |
| GSMUA_Achr11P... | Banana | cytosol | 2.74 | 66.67 |
| GSMUA_Achr11P... | Banana | nucleus | 56.12 | 57.39 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 57.28 | 57.22 |
| PGSC0003DMT400057635 | Potato | nucleus | 51.16 | 55.05 |
| Solyc02g078550.2.1 | Tomato | nucleus | 54.85 | 54.51 |
| KRH20483 | Soybean | nucleus | 54.11 | 53.44 |
| KRH50009 | Soybean | nucleus | 53.48 | 53.03 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 43.35 | 52.16 |
| GSMUA_Achr11P... | Banana | extracellular | 10.02 | 51.91 |
| KRH10835 | Soybean | nucleus | 52.0 | 51.46 |
| CDY31421 | Canola | cytosol | 45.25 | 51.19 |
| KRH21480 | Soybean | nucleus | 51.69 | 51.04 |
| CDX76438 | Canola | cytosol | 45.57 | 51.0 |
| Bra020905.1-P | Field mustard | cytosol | 45.57 | 51.0 |
| Bra038764.1-P | Field mustard | nucleus | 50.11 | 50.16 |
| CDX98696 | Canola | nucleus | 49.16 | 50.0 |
| CDX94046 | Canola | nucleus | 49.79 | 49.63 |
| AT4G21670.1 | Thale cress | nucleus | 50.53 | 49.53 |
| CDX79083 | Canola | nucleus | 43.14 | 47.61 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 7.81 | 46.25 |
| Bra013546.1-P | Field mustard | nucleus | 41.98 | 45.33 |
| TraesCS3A01G370000.2 | Wheat | mitochondrion | 33.65 | 43.17 |
Protein Annotations
| EnsemblPlants:TraesCS2A01G373400.3 | EnsemblPlantsGene:TraesCS2A01G373400 | Gene3D:3.30.160.20 | InterPro:FCP1_dom | InterPro:HAD-like_sf | InterPro:IPR004274 |
| InterPro:IPR014720 | InterPro:dsRBD_dom | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF11 | PFAM:PF00035 | PFAM:PF03031 |
| PFscan:PS50137 | PFscan:PS50969 | SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 |
| TIGR:cd00048 | MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | : | : | : |
Description
No Description!
Coordinates
chr2A:-:615706272..615714440
Molecular Weight (calculated)
105689.0 Da
IEP (calculated)
5.926
GRAVY (calculated)
-0.481
Length
948 amino acids
Sequence
(BLAST)
(BLAST)
001: MIKSMVYFGH ISIGEVELSP KGETNVAAAP WVREIRVDRL SPPSERCLPL AVLHTVSSGA LCFVMESRPS PATADNEPPS SLVAMHTACL RDNKTAVFPL
101: GAEEIHLVAM KPKSNLPNHA CFWGYKVPLG LYSSCLSMLN LRCLGIVFDL DETLIVANTT RSFEDRIDAL QRKLSKETDP QRISGMLAEI KRYQEDRTML
201: KQYIDGDQVI DGGKMYKVQS EVVPPLADNH QPMIRPVIRL QDKSIILTRI NPSIRDTSVL VRLRPAWDDL RSYLIARGRK RFEVYVCTMA ERDYALEMWR
301: LLDPDSRLIN SVQLPHRLVC VKSGSKKSLL NVFHDGSCHP GMALVIDDRL KVWEEKDQCR VHVVPAFSPY YAPQAEANFP IPVLCVARNV ACNVRGSFFK
401: EFDEGLLPSI SEVHFDDELD HVPSSPDVGN YLISEDENAA SLNVNKDPMA FDGMADAEVE RRMKEAVCSV QAADPVTTNV DVISVAANQQ FATSSSIPLA
501: PPLGVVPLNN DQGPQPPSVS WPDAQSGMVD PLQGSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPTP PFAAEPSVQA SVPPVQSQGN WFPVEDEMDP
601: RNLNRTSTDF HLESDAVHSD KSQPPHQPYF PARDNPIFSD RLNHQNQRYS SQLPHSEDRQ MLQNQAPTTY RSFSGEDMAT QRFHPGNRSS QMESGRQFVQ
701: YTETSGAVLE EIAAKCGFKV EYRSTLCDTT ELRFSIQIWI VGEKVGEGMG RTRKEAQRQA ANISLRNLAD RFLSFDPDKM TVPVDDGFSS NPNSFKYRGI
801: DGDNIVPVAS TSDGSRYMHE RVDNSTKSAG SVAALKELCT AEGYNLVFQA QPSPSDSLRR EEVHAQIEIG GQILGKGVGV TWEEAKVQAA DGALGTLRYM
901: LGQRPQKRSG SPRSFASNYN NKRYKPDFQP MVQRIPSGRY SRNDSRVP
101: GAEEIHLVAM KPKSNLPNHA CFWGYKVPLG LYSSCLSMLN LRCLGIVFDL DETLIVANTT RSFEDRIDAL QRKLSKETDP QRISGMLAEI KRYQEDRTML
201: KQYIDGDQVI DGGKMYKVQS EVVPPLADNH QPMIRPVIRL QDKSIILTRI NPSIRDTSVL VRLRPAWDDL RSYLIARGRK RFEVYVCTMA ERDYALEMWR
301: LLDPDSRLIN SVQLPHRLVC VKSGSKKSLL NVFHDGSCHP GMALVIDDRL KVWEEKDQCR VHVVPAFSPY YAPQAEANFP IPVLCVARNV ACNVRGSFFK
401: EFDEGLLPSI SEVHFDDELD HVPSSPDVGN YLISEDENAA SLNVNKDPMA FDGMADAEVE RRMKEAVCSV QAADPVTTNV DVISVAANQQ FATSSSIPLA
501: PPLGVVPLNN DQGPQPPSVS WPDAQSGMVD PLQGSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPTP PFAAEPSVQA SVPPVQSQGN WFPVEDEMDP
601: RNLNRTSTDF HLESDAVHSD KSQPPHQPYF PARDNPIFSD RLNHQNQRYS SQLPHSEDRQ MLQNQAPTTY RSFSGEDMAT QRFHPGNRSS QMESGRQFVQ
701: YTETSGAVLE EIAAKCGFKV EYRSTLCDTT ELRFSIQIWI VGEKVGEGMG RTRKEAQRQA ANISLRNLAD RFLSFDPDKM TVPVDDGFSS NPNSFKYRGI
801: DGDNIVPVAS TSDGSRYMHE RVDNSTKSAG SVAALKELCT AEGYNLVFQA QPSPSDSLRR EEVHAQIEIG GQILGKGVGV TWEEAKVQAA DGALGTLRYM
901: LGQRPQKRSG SPRSFASNYN NKRYKPDFQP MVQRIPSGRY SRNDSRVP
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.