Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum, vacuole
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- endoplasmic reticulum 3
- extracellular 2
- vacuole 3
- plasma membrane 2
- golgi 2
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G373400.3 | Wheat | nucleus | 91.02 | 85.55 |
| TraesCS2B01G390500.3 | Wheat | nucleus | 89.23 | 83.77 |
| TraesCS2D01G369600.4 | Wheat | nucleus | 89.0 | 83.65 |
| Os04t0529500-02 | Rice | extracellular | 73.06 | 69.77 |
| KXG26770 | Sorghum | nucleus | 71.83 | 67.94 |
| GSMUA_Achr11P... | Banana | cytosol | 2.92 | 66.67 |
| HORVU6Hr1G060230.12 | Barley | nucleus | 69.02 | 65.99 |
| GSMUA_Achr8P14120_001 | Banana | nucleus | 57.69 | 54.16 |
| GSMUA_Achr11P... | Banana | nucleus | 55.89 | 53.72 |
| PGSC0003DMT400057635 | Potato | nucleus | 51.29 | 51.87 |
| Solyc02g078550.2.1 | Tomato | nucleus | 55.11 | 51.47 |
| GSMUA_Achr11P... | Banana | extracellular | 10.33 | 50.27 |
| KRH20483 | Soybean | nucleus | 53.87 | 50.0 |
| KRH50009 | Soybean | nucleus | 53.42 | 49.79 |
| VIT_00s0370g00040.t01 | Wine grape | cytosol, nucleus | 42.76 | 48.35 |
| KRH10835 | Soybean | nucleus | 51.96 | 48.33 |
| KRH21480 | Soybean | nucleus | 51.4 | 47.71 |
| CDY31421 | Canola | cytosol | 44.67 | 47.49 |
| Bra020905.1-P | Field mustard | cytosol | 45.12 | 47.46 |
| CDX76438 | Canola | cytosol | 44.89 | 47.23 |
| Bra038764.1-P | Field mustard | nucleus | 50.06 | 47.1 |
| CDX98696 | Canola | nucleus | 49.16 | 47.0 |
| CDX94046 | Canola | nucleus | 50.06 | 46.9 |
| AT4G21670.1 | Thale cress | nucleus | 50.73 | 46.74 |
| VIT_00s0370g00030.t01 | Wine grape | nucleus, plastid | 8.08 | 45.0 |
| CDX79083 | Canola | nucleus | 42.65 | 44.24 |
| Bra013546.1-P | Field mustard | nucleus | 41.64 | 42.26 |
Protein Annotations
| MapMan:15.3.2.2 | MapMan:18.4.25.1.5 | Gene3D:3.30.160.20 | UniProt:A0A287IWY8 | InterPro:FCP1_dom | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0005488 | GO:GO:0006139 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008420 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016787 |
| GO:GO:0019538 | GO:GO:0070940 | InterPro:HAD-like_sf | EnsemblPlantsGene:HORVU2Hr1G091030 | EnsemblPlants:HORVU2Hr1G091030.9 | InterPro:IPR004274 |
| InterPro:IPR014720 | PFAM:PF03031 | PFscan:PS50137 | PFscan:PS50969 | PANTHER:PTHR23081 | PANTHER:PTHR23081:SF11 |
| SMART:SM00358 | SMART:SM00577 | SUPFAM:SSF54768 | SUPFAM:SSF56784 | UniParc:UPI000B47B3C6 | InterPro:dsRBD_dom |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chrchr2H:+:646930203..646939373
Molecular Weight (calculated)
100117.0 Da
IEP (calculated)
6.169
GRAVY (calculated)
-0.486
Length
891 amino acids
Sequence
(BLAST)
(BLAST)
001: MPWYSPFKWV CFTNFPPYFL VKHLFCLSYL LPVNSLCLQT AVFPLGIEEI HLVAMKPKSN LPNHACFWGY KVPLGLYNSC LSMLNLRCLG IVFDLDETLI
101: VANTTRSFED RIDALQRKLS KEIDPQRISG MLAEIKRYQE DRSMLKQYID GDQVNDGGKV YKVQSEVVPP LSDNHQPMIR PVIRLQERSI ILTRINPSIR
201: DTSVLVRLRP AWDDLRSYLI ARGRKRFEVY VCTMAERDYA LEMWRLLDPD SRLINSVQLP HRLVCVKSGS KKSLLNVFHD GSCHPGMALV IDDRLKVWDE
301: KDQCRVHVVP AFSPYYAPQA EANFPIPVLC VARNVACNVR GSFFKEFDEG LLPSISDVHF DDELNHVPSS PDVGNYLISE DENAASLNVN KDPLAFDGMA
401: DAEVERRMKE AVCSVQAADP VTTDVDVMPV AANQQLATSS FIPLAPPLGM VPLNNDQGPQ PPSISWPDAQ AGLVDPSQGS PAREEGEVPE SELDPDTRRR
501: LLILQHGQDT RDPTPPFAAE PSVQVSVPPV QSQGNWFPVE DEMDPRNLNR TSTDFHLESD AVPSDKSHPP HQPYFPAHDN PVFSDRFNHQ NQRYSSQLPH
601: SEDRRMLQNQ APTTYRSFSG EDMATQRFHS GHRSSQMEPG RQLQYTETSG AVLEEIAAKC GFKVEYRSTL CDTTELRFSI QIWIVGEKVG EGMGRTRKEA
701: QYQAANISLR NLADRFLSFD PDKMAVSKDD GFSSNPNKFK YTGNDGDDIV PVASTSDGSR YMHERVDNST KSAGSVAALK ELCTAEGYNL VFQVQPSPLD
801: SLTRKEIHAQ IEIGGQILGK GVGATWEEAK VQAADGALGT LRYMLGQRPQ KRSGSPRSFG SNYNKRYKPD FQPLVQRFPS GRYSRNDSRV P
101: VANTTRSFED RIDALQRKLS KEIDPQRISG MLAEIKRYQE DRSMLKQYID GDQVNDGGKV YKVQSEVVPP LSDNHQPMIR PVIRLQERSI ILTRINPSIR
201: DTSVLVRLRP AWDDLRSYLI ARGRKRFEVY VCTMAERDYA LEMWRLLDPD SRLINSVQLP HRLVCVKSGS KKSLLNVFHD GSCHPGMALV IDDRLKVWDE
301: KDQCRVHVVP AFSPYYAPQA EANFPIPVLC VARNVACNVR GSFFKEFDEG LLPSISDVHF DDELNHVPSS PDVGNYLISE DENAASLNVN KDPLAFDGMA
401: DAEVERRMKE AVCSVQAADP VTTDVDVMPV AANQQLATSS FIPLAPPLGM VPLNNDQGPQ PPSISWPDAQ AGLVDPSQGS PAREEGEVPE SELDPDTRRR
501: LLILQHGQDT RDPTPPFAAE PSVQVSVPPV QSQGNWFPVE DEMDPRNLNR TSTDFHLESD AVPSDKSHPP HQPYFPAHDN PVFSDRFNHQ NQRYSSQLPH
601: SEDRRMLQNQ APTTYRSFSG EDMATQRFHS GHRSSQMEPG RQLQYTETSG AVLEEIAAKC GFKVEYRSTL CDTTELRFSI QIWIVGEKVG EGMGRTRKEA
701: QYQAANISLR NLADRFLSFD PDKMAVSKDD GFSSNPNKFK YTGNDGDDIV PVASTSDGSR YMHERVDNST KSAGSVAALK ELCTAEGYNL VFQVQPSPLD
801: SLTRKEIHAQ IEIGGQILGK GVGATWEEAK VQAADGALGT LRYMLGQRPQ KRSGSPRSFG SNYNKRYKPD FQPLVQRFPS GRYSRNDSRV P
001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS
Arabidopsis Description
CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.