Factsheet for Bra013546.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
vacuole 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000480.1-P
Bra007062.1-P
Bra011923.1-P
Bra012034.1-P
Bra012337.1-P
Bra014824.1-P
Bra016476.1-P
Bra017998.1-P
Bra018998.1-P
Bra019588.1-P
Bra019999.1-P
Bra024526.1-P
Bra025793.1-P
Bra030793.1-P
Bra032944.1-P
Bra034322.1-P
Bra034407.1-P
Bra035664.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	Bra019999.1-P	AT1G09700.1	23141542
AT4G21670.1	Bra030793.1-P	AT1G09700.1	23141542
AT4G21670.1	Bra016476.1-P	AT1G20110.1	18541146
AT4G21670.1	Bra025793.1-P	AT1G20110.1	18541146
AT4G21670.1	Bra012337.1-P	AT1G22640.1	18541146
AT4G21670.1	Bra024526.1-P	AT1G22640.1	18541146
AT4G21670.1	Bra034407.1-P	AT1G35670.1	19130088
AT4G21670.1	Bra018998.1-P	AT1G52890.1	18541146
AT4G21670.1	Bra012034.1-P	AT2G27100.1	23141542
AT4G21670.1	Bra034322.1-P	AT2G27100.1	23141542
AT4G21670.1	Bra000480.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra011923.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra035664.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra032944.1-P	AT3G26730.1	18541146
AT4G21670.1	Bra017998.1-P	AT3G49250.1	18541146
AT4G21670.1	Bra019588.1-P	AT3G49250.1	18541146
AT4G21670.1	Bra007062.1-P	AT3G54290.1	18541146
AT4G21670.1	Bra014824.1-P	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX79083	Canola	nucleus	88.38	90.34
Zm00001d029743_P001	Maize	cytosol	8.77	66.96
Bra038764.1-P	Field mustard	nucleus	68.0	63.04
Bra020905.1-P	Field mustard	cytosol	60.02	62.22
GSMUA_Achr11P...	Banana	cytosol	2.73	61.54
AT4G21670.1	Thale cress	nucleus	64.92	58.95
KRH50009	Soybean	nucleus	52.05	47.8
PGSC0003DMT400057635	Potato	nucleus	47.49	47.33
KRH10835	Soybean	nucleus	51.59	47.29
KRH20483	Soybean	nucleus	51.59	47.19
KRH21480	Soybean	nucleus	51.14	46.77
Solyc02g078550.2.1	Tomato	nucleus	49.89	45.91
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	40.66	45.3
GSMUA_Achr11P...	Banana	extracellular	9.34	44.81
GSMUA_Achr11P...	Banana	nucleus	45.67	43.26
EES05486	Sorghum	cytosol	45.22	42.51
Os04t0529500-02	Rice	extracellular	44.99	42.34
HORVU6Hr1G060230.12	Barley	nucleus	44.76	42.17
Os02t0639000-01	Rice	cytosol	45.1	42.13
GSMUA_Achr8P14120_001	Banana	nucleus	45.44	42.04
TraesCS2A01G373400.3	Wheat	nucleus	45.33	41.98
TraesCS6A01G235300.4	Wheat	nucleus	44.87	41.87
TraesCS6B01G264000.3	Wheat	nucleus	44.87	41.83
TraesCS6D01G218000.3	Wheat	nucleus	44.87	41.83
HORVU2Hr1G091030.9	Barley	endoplasmic reticulum, vacuole	42.26	41.64
TraesCS2D01G369600.4	Wheat	nucleus	44.42	41.14
KXG26770	Sorghum	nucleus	43.96	40.98
TraesCS2B01G390500.3	Wheat	nucleus	44.08	40.78
Zm00001d017373_P001	Maize	nucleus	44.65	40.75
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	42.37	39.7
Bra005692.1-P	Field mustard	nucleus	33.03	36.66

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	EnsemblPlantsGene:Bra013546	EnsemblPlants:Bra013546.1	EnsemblPlants:Bra013546.1-P
InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0070940	InterPro:HAD-like_sf	InterPro:IPR004274
InterPro:IPR014720	UniProt:M4DAN6	PFAM:PF00035	PFAM:PF03031	PFscan:PS50137	PFscan:PS50969
PANTHER:PTHR23081	PANTHER:PTHR23081:SF17	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784
UniParc:UPI000254715E	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

AT4G21670 (E=2e-210) CPL1, FRY2, ATCPL1 | CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA binding / nucleotide phosphatase

Coordinates

chrA01:+:6227808..6232696

Molecular Weight (calculated)

96789.2 Da

IEP (calculated)

7.399

GRAVY (calculated)

-0.315

Length

878 amino acids

Sequence
(BLAST)

001: MYNSNRVQVY HEDVRVGEME IHPLKEDDVL KERKKRVMEE VKMGIKISGF SQPSKRCTPL SVLTTISSSG LCFKLEATTA AHDPLSVFHS SCLRDQKTAV
101: MSLGGEELHL VAMCSEDINN DRPCFWAFTV APGMYDSCLG MLNLRCLGIV FDLDETLVVA NTLHTFEVKM EGLLRRMSSE VDPRRRAVMV AQMKRYQDDK
201: NLLKQYVESD QVVENGEVIK AQSEIVPALS DNHQPLVRSL IRLQEKNIVL TRINPMKRDT SVLVRLRTSW EELRSYLTAK EQRKRFEVYV CTMADKDYAL
301: EMWRLLDPEG NLINANDLLA RIVCVKSGFK KSLFNVFLNA TCHPKMALVI DDRREVWDEK DQPRVHVVRA FAPYHSPKAE AAATPVLCAA KNLACVVRTG
401: FFKHFDDSLL PRIAEISYEN DVEDIPSPPD VSHYLVSEDV TSGLNGNKDP LSSDKMADAG VGRILKEAIC GSSAALPAAN TDPRIAAPVQ QPIASASYVS
501: APVPVPVPVP APVPVPVMQQ APQPIASASY VSAPVPVPVP VPAPVPVPVM QQAPQPSAIA LPSIQFQQPA IVATHLVPSE TSLQNSPASE GEVPESELDL
601: DTRRRLLILK HGQDPRDAAP SEPSFPKRPP VQAPPPRVQP RNGWFAAEEE MDPKTENPVG LLHEIAIKCG TKVDYKPGLV ASTNMRFSIE AWFCGKKIGV
701: GIGKSRREAL QKAAEFSIQN LADIYLSREN GDAGPSHRDA GPLTNQPSAG DETAMPVATY TRLEGSIRHN GSIPTLRELC ASEGWELSFQ SQRPLHSDMV
801: HTEEFHAKVA INGRVLGEGV GSTWEKARMN AAERALGNVG PLLQRQVSSR SFGGKSNKRL KPNFQRSMQR MASSGRSS

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.