Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 5
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra013546.1-P | |
| Bra020905.1-P | |
| Bra038764.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G26730.1 | Bra013546.1-P | AT4G21670.1 | 18541146 |
| AT3G26730.1 | Bra020905.1-P | AT4G21670.1 | 18541146 |
| AT3G26730.1 | Bra038764.1-P | AT4G21670.1 | 18541146 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY48977 | Canola | nucleus, plastid | 93.92 | 97.13 |
| CDY28532 | Canola | nucleus, plastid | 91.94 | 95.74 |
| CDX71433 | Canola | extracellular | 15.06 | 85.07 |
| AT3G26730.1 | Thale cress | plastid | 77.15 | 75.65 |
| KRH06829 | Soybean | nucleus | 45.71 | 49.01 |
| KRG94698 | Soybean | nucleus, plastid | 48.35 | 49.0 |
| VIT_14s0068g01130.t01 | Wine grape | plastid | 46.24 | 48.01 |
| Os02t0516600-01 | Rice | nucleus, plastid | 43.59 | 44.35 |
| GSMUA_Achr6P20560_001 | Banana | extracellular, golgi | 42.01 | 43.62 |
| TraesCS5A01G135100.1 | Wheat | nucleus, plastid | 41.88 | 42.95 |
| TraesCS5B01G133900.2 | Wheat | nucleus, plastid | 41.74 | 42.93 |
| TraesCS5D01G139400.2 | Wheat | plastid | 41.61 | 42.92 |
| EES06877 | Sorghum | nucleus | 41.61 | 42.45 |
| HORVU5Hr1G043380.1 | Barley | plastid | 41.48 | 41.92 |
| Zm00001d016602_P001 | Maize | nucleus, plastid | 41.61 | 40.59 |
| Solyc02g094510.2.1 | Tomato | nucleus, plastid | 24.04 | 37.84 |
Protein Annotations
| EnsemblPlants:Bra032944.1 | EnsemblPlants:Bra032944.1-P | EnsemblPlantsGene:Bra032944 | Gene3D:3.30.40.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0046872 | InterPro:IPR001841 | InterPro:IPR013083 | InterPro:Znf_C3HC4_RING-type | InterPro:Znf_RING | InterPro:Znf_RING/FYVE/PHD |
| InterPro:Znf_RING_CS | PANTHER:PTHR12983 | PFAM:PF00097 | PFscan:PS50089 | ScanProsite:PS00518 | SEG:seg |
| SMART:SM00184 | SUPFAM:SSF57850 | UniParc:UPI000254598F | UniProt:M4EVW1 | MapMan:35.2 | : |
Description
AT3G26730 (E=2e-271) | zinc finger (C3HC4-type RING finger) family protein
Coordinates
chrA02:-:22370817..22374273
Molecular Weight (calculated)
84035.7 Da
IEP (calculated)
7.374
GRAVY (calculated)
-0.760
Length
757 amino acids
Sequence
(BLAST)
(BLAST)
001: MSILPPTHIQ GHESSPPPSN SSLNPSSEHG NSSLVSPPSS RIGSLSLAGS SLPTSDFSSG SREPNTAAEE EHSHGSSKEI TQIGAGKESF SPPSADRHDH
101: LRYESRRNRS RGRNARSAAS SSSHVQQQHN ATGPSNSPRV SSHHNPTGRR ANMISGNHLL NFQYDPISPQ QSRPPPPPQR RQMHRRRPYN KDLFLQANYK
201: FVVLDTGDHS PDSMDPDKML QWDNIICVRY STPSPVQCPI CLEYPLCPQI TSCGHIFCFP CVLQYLLIGE DNHKAECFKR CPLCFVMISP RELYTVYIEN
301: VKQYSVGDPI EFILLTRKKD SFAPTRKNES DSDVPDPFSK FTFTQDVDLS VRQAVSELDG WIARADPGLV DDLEKHLYVN AALERLEERK LYWKEQRLSN
401: CCKPSAKPRS HVPSSSPPDV SRAGYQAPSL AKGATISSSN DQDKSTEESS VGKSDEESQS SLEKSCDDGH SLVEKDAPLM PSSDNGSKRP LLHQNDSKDQ
501: KDNDDAYNFY QSVDGQHIIL HSLNMKCLLH HYGSNDFLPT RVSGKIVEME TVTQSEAIRR RYRFLSHFSL TTTFQICEID MRESLPPEAF APFMDEIKKR
601: EKQRKERARK EQKDKIKAEV AAAAELAPLM ASCGQFYYGD DPSFSLDDFE ALGNSAPVVS SSPPTIGERS SFSHVTRLGF AAGHDSPNLN NEPTNIQSSS
701: SNSEVSNATT GARNTNTTSF ASVTSRTPTT PVAIKEPGKR GKKQSRVLLS TTSVRRY
101: LRYESRRNRS RGRNARSAAS SSSHVQQQHN ATGPSNSPRV SSHHNPTGRR ANMISGNHLL NFQYDPISPQ QSRPPPPPQR RQMHRRRPYN KDLFLQANYK
201: FVVLDTGDHS PDSMDPDKML QWDNIICVRY STPSPVQCPI CLEYPLCPQI TSCGHIFCFP CVLQYLLIGE DNHKAECFKR CPLCFVMISP RELYTVYIEN
301: VKQYSVGDPI EFILLTRKKD SFAPTRKNES DSDVPDPFSK FTFTQDVDLS VRQAVSELDG WIARADPGLV DDLEKHLYVN AALERLEERK LYWKEQRLSN
401: CCKPSAKPRS HVPSSSPPDV SRAGYQAPSL AKGATISSSN DQDKSTEESS VGKSDEESQS SLEKSCDDGH SLVEKDAPLM PSSDNGSKRP LLHQNDSKDQ
501: KDNDDAYNFY QSVDGQHIIL HSLNMKCLLH HYGSNDFLPT RVSGKIVEME TVTQSEAIRR RYRFLSHFSL TTTFQICEID MRESLPPEAF APFMDEIKKR
601: EKQRKERARK EQKDKIKAEV AAAAELAPLM ASCGQFYYGD DPSFSLDDFE ALGNSAPVVS SSPPTIGERS SFSHVTRLGF AAGHDSPNLN NEPTNIQSSS
701: SNSEVSNATT GARNTNTTSF ASVTSRTPTT PVAIKEPGKR GKKQSRVLLS TTSVRRY
001: MSILPPPIIQ GHNSSSPSSD SSLNPSSEHG NNSSSSLSPL PSSPPSRISS STGTRFSGHS ESSHNFSGGS REPSVAAEEG HSRGSSKEMT QNGAGKESFS
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
101: PPNADKRDHF RYDGRRNRSR GRGTGAAGSS SSQLQHNSGP FNSPRGGVSH HNPTGRRANM ISGNHLLNFQ YDPISQPQSR GPPPPQRRQQ YKGRPFNKDL
201: FLKANYKFVV LDTGDHSPDS MDPDKMLQWD DIICVRYSTP SPVQCPICLE YPLCPQITSC GHIFCFPCIL QYLLTGVDNH KVDCFKRCPL CFVMISPREL
301: YTVYIENVKQ YSVGDPIEFV LLTRKKDSFA PTRKNEHDLA VPNGENEIYD PFSKFTFTQD VDLSVRQAVS ELDSWIARAD PQLVEDLEKH LYVNAALERL
401: EQRKLYWNEH KLSIYSKVCT TARNQTQSLS PPDVSRVGYQ APMGGHGAPD SGSNDQDKST EDSSADKSDG ESQSSLEKGC DNDLGHPLED QDAPSSSSCN
501: GSKGFLSHQI DTKDLKDNDA YNFYQSVDGQ HIILHTLNVK CLLHHYGSYD FLPPRLSGKI LEMETITQSE AIRRRYRFLS HFSLSTTLQI CEIDMKESLP
601: PDAFAPFIHE IKKREKQRKE RAWKDRKNKI KAEVAAAAEL VPLMASFGQS SSSDDFPPFS LDDFEALGNS APISSSPPNI GERSSFSHVT RLGFAAGHDS
701: PNLNNEPTNV QSSSSSSEVS NATTGARNTN ITSFASVASR TTTPMAPTVK EPGKRGKKQS RVLLSTTSVR RY
Arabidopsis Description
Putative RING zinc finger protein [Source:UniProtKB/TrEMBL;Acc:Q9LSE3]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.