Factsheet for Bra020905.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000480.1-P
Bra007062.1-P
Bra011923.1-P
Bra012034.1-P
Bra012337.1-P
Bra014824.1-P
Bra016476.1-P
Bra017998.1-P
Bra018998.1-P
Bra019588.1-P
Bra019999.1-P
Bra024526.1-P
Bra025793.1-P
Bra030793.1-P
Bra032944.1-P
Bra034322.1-P
Bra034407.1-P
Bra035664.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G21670.1	Bra019999.1-P	AT1G09700.1	23141542
AT4G21670.1	Bra030793.1-P	AT1G09700.1	23141542
AT4G21670.1	Bra016476.1-P	AT1G20110.1	18541146
AT4G21670.1	Bra025793.1-P	AT1G20110.1	18541146
AT4G21670.1	Bra012337.1-P	AT1G22640.1	18541146
AT4G21670.1	Bra024526.1-P	AT1G22640.1	18541146
AT4G21670.1	Bra034407.1-P	AT1G35670.1	19130088
AT4G21670.1	Bra018998.1-P	AT1G52890.1	18541146
AT4G21670.1	Bra012034.1-P	AT2G27100.1	23141542
AT4G21670.1	Bra034322.1-P	AT2G27100.1	23141542
AT4G21670.1	Bra000480.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra011923.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra035664.1-P	AT2G28840.1	18541146
AT4G21670.1	Bra032944.1-P	AT3G26730.1	18541146
AT4G21670.1	Bra017998.1-P	AT3G49250.1	18541146
AT4G21670.1	Bra019588.1-P	AT3G49250.1	18541146
AT4G21670.1	Bra007062.1-P	AT3G54290.1	18541146
AT4G21670.1	Bra014824.1-P	AT3G54290.1	18541146

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76438	Canola	cytosol	98.11	98.11
CDY31421	Canola	cytosol	92.56	93.56
Zm00001d029743_P001	Maize	cytosol	10.04	73.91
Bra038764.1-P	Field mustard	nucleus	78.51	70.22
GSMUA_Achr11P...	Banana	cytosol	3.07	66.67
AT4G21670.1	Thale cress	nucleus	75.56	66.18
Bra013546.1-P	Field mustard	nucleus	62.22	60.02
VIT_00s0370g00040.t01	Wine grape	cytosol, nucleus	49.82	53.55
KRH50009	Soybean	nucleus	59.03	52.3
KRH20483	Soybean	nucleus	58.91	51.98
PGSC0003DMT400057635	Potato	nucleus	53.6	51.53
KRH10835	Soybean	nucleus	57.38	50.73
KRH21480	Soybean	nucleus	56.79	50.1
Solyc02g078550.2.1	Tomato	nucleus	55.84	49.58
GSMUA_Achr11P...	Banana	extracellular	10.51	48.63
EES05486	Sorghum	cytosol	51.12	46.36
Os02t0639000-01	Rice	cytosol	51.24	46.17
HORVU6Hr1G060230.12	Barley	nucleus	50.3	45.71
TraesCS2A01G373400.3	Wheat	nucleus	51.0	45.57
GSMUA_Achr11P...	Banana	nucleus	49.7	45.42
TraesCS6B01G264000.3	Wheat	nucleus	50.3	45.22
GSMUA_Achr8P14120_001	Banana	nucleus	50.65	45.21
HORVU2Hr1G091030.9	Barley	endoplasmic reticulum, vacuole	47.46	45.12
TraesCS6A01G235300.4	Wheat	nucleus	50.06	45.06
Os04t0529500-02	Rice	extracellular	49.47	44.91
TraesCS6D01G218000.3	Wheat	nucleus	49.94	44.9
TraesCS2D01G369600.4	Wheat	nucleus	49.94	44.62
TraesCS2B01G390500.3	Wheat	nucleus	49.82	44.47
Zm00001d017373_P001	Maize	nucleus	50.41	44.39
KXG26770	Sorghum	nucleus	48.29	43.42
Zm00001d051242_P002	Maize	cytosol, nucleus, plastid	47.7	43.12
Bra005692.1-P	Field mustard	nucleus	37.9	40.58

Protein Annotations

MapMan:15.3.2.2	MapMan:18.4.25.1.5	Gene3D:3.30.160.20	EnsemblPlantsGene:Bra020905	EnsemblPlants:Bra020905.1	EnsemblPlants:Bra020905.1-P
InterPro:FCP1_dom	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0005488
GO:GO:0006139	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008420	GO:GO:0009058
GO:GO:0009987	GO:GO:0016787	GO:GO:0019538	GO:GO:0070940	InterPro:HAD-like_sf	InterPro:IPR004274
InterPro:IPR014720	UniProt:M4DWL1	PFAM:PF00035	PFAM:PF03031	PFscan:PS50137	PFscan:PS50969
PANTHER:PTHR23081	PANTHER:PTHR23081:SF17	SMART:SM00358	SMART:SM00577	SUPFAM:SSF54768	SUPFAM:SSF56784
UniParc:UPI0002545A25	InterPro:dsRBD_dom	SEG:seg	:	:	:

Description

AT4G21670 (E=0.0) CPL1, FRY2, ATCPL1 | CPL1 (C-TERMINAL DOMAIN PHOSPHATASE-LIKE 1); double-stranded RNA binding / nucleotide phosphatase

Coordinates

chrA08:-:11295465..11299279

Molecular Weight (calculated)

94743.2 Da

IEP (calculated)

6.155

GRAVY (calculated)

-0.445

Length

847 amino acids

Sequence
(BLAST)

001: MYNNSNRVQV YLEDGRFGEM QICPPRESHQ EDQVMKQRRV MEKVTMGMGI RISRFSQPSE RCPPLAVLAT VSSCGLCFKL EASPSPPQEQ LSLLYSSCLR
101: GNKTAVMSLG EEELHLVAMY AENINNDRPC FWAFTVAPGI YDSCLVMLNL RCLGIVFDLD ETLVVANTTR TFEDKIEGLQ RRINNEGDPQ RIAAMVAEMK
201: RYQDDRNLLK QYIESDQVID NGEVVKVQSE LVPALSENHQ PLVRPLIRLP EKNIILTRIN PMIRDTSVLV RMRPSWEELR SYLTAKGRKR FEVYVCTMAE
301: RDYALEMWRL LDPEGNLINA SDLLARIVCV KSGFKKSLVN VFPDATCHPK MAMVIDDRLK VWEEKDQPRV YVVPAFVPYY SPQAEAAATP VLCVTRNVAC
401: RVRGGFFRDF DDSLLQRIAE ISYENDVEDI PSPPDVSHYL VPEDETSGLN ENKDPLSLDG MAEVERRLKE AISVVLPAAN IDPRIAAPVQ YPMASVSVSA
501: PVPVAVPVVQ QAPQPSAMAF PSIQFQQPIS IAKLLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDSRDAAP SEPPFPQRPP VQAPPPQAQP
601: RNGWFPVEDM DPATLRRTVS KEYPVDSERP RHQSDRMPHE NRRLPKELRP NNNLPGSHPF YGEEASWNQS SSRISDIGRS VSATENPAEA LHEIAIKCGT
701: KVDYRPGLVA STDLRFSVEA WFSGKKVGEG IGKSRREALQ KAAELSLQNL ADIYLSVANG DAGPSHRDAI ASPLANGNMI MGGNANTFDN LPFARDETAM
801: AVPSRSMLPL HKRQGSPRSF GGMSNKRLKP DFQRSSMQRM PSSGRYS

Best Arabidopsis Sequence Match ( AT4G21670.1 )
(BLAST)

001: MYSNNRVEVF HGDGRLGELE IYPSRELNQQ QDDVMKQRKK KQREVMELAK MGIRISHFSQ SGERCPPLAI LTTISSCGLC FKLEASPSPA QESLSLFYSS
101: CLRDNKTAVM LLGGEELHLV AMYSENIKND RPCFWAFSVA PGIYDSCLVM LNLRCLGIVF DLDETLVVAN TMRSFEDKID GFQRRINNEM DPQRLAVIVA
201: EMKRYQDDKN LLKQYIESDQ VVENGEVIKV QSEIVPALSD NHQPLVRPLI RLQEKNIILT RINPMIRDTS VLVRMRPSWE ELRSYLTAKG RKRFEVYVCT
301: MAERDYALEM WRLLDPEGNL INTNDLLARI VCVKSGFKKS LFNVFLDGTC HPKMALVIDD RLKVWDEKDQ PRVHVVPAFA PYYSPQAEAA ATPVLCVARN
401: VACGVRGGFF RDFDDSLLPR IAEISYENDA EDIPSPPDVS HYLVSEDDTS GLNGNKDPLS FDGMADTEVE RRLKEAISAS SAVLPAANID PRIAAPVQFP
501: MASASSVSVP VPVQVVQQAI QPSAMAFPSI PFQQPQQPTS IAKHLVPSEP SLQSSPAREE GEVPESELDP DTRRRLLILQ HGQDTRDPAP SEPSFPQRPP
601: VQAPPSHVQS RNGWFPVEEE MDPAQIRRAV SKEYPLDSEM IHMEKHRPRH PSFFSKIDNS TQSDRMLHEN RRPPKESLRR DEQLRSNNNL PDSHPFYGED
701: ASWNQSSSRN SDLDFLPERS VSATETSADV LHGIAIKCGA KVEYKPSLVS STDLRFSVEA WLSNQKIGEG IGKSRREALH KAAEASIQNL ADGYMRANGD
801: PGPSHRDATP FTNENISMGN ANALNNQPFA RDETALPVSS RPTDPRLEGS MRHTGSITAL RELCASEGLE MAFQSQRQLP SDMVHRDELH AQVEIDGRVV
901: GEGVGSTWDE ARMQAAERAL SSVRSMLGQP LHKRQGSPRS FGGMSNKRLK PDFQRSLQRM PSSGRYS

Arabidopsis Description

CPL1RNA polymerase II C-terminal domain phosphatase-like 1 [Source:UniProtKB/Swiss-Prot;Acc:Q5YDB6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.