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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra003473.1-P
Bra012239.1-P
Bra013546.1-P
Bra014069.1-P
Bra014421.1-P
Bra017699.1-P
Bra017700.1-P
Bra020905.1-P
Bra025833.1-P
Bra032216.1-P
Bra034677.1-P
Bra034678.1-P
Bra038764.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G49250.1 Bra012239.1-P AT1G20630.1 21798944
AT3G49250.1 Bra025833.1-P AT1G20630.1 21798944
AT3G49250.1 Bra014069.1-P AT1G47260.1 21798944
AT3G49250.1 Bra032216.1-P AT1G47260.1 21798944
AT3G49250.1 Bra003473.1-P AT3G61790.1 21798944
AT3G49250.1 Bra014421.1-P AT3G61790.1 21798944
AT3G49250.1 Bra013546.1-P AT4G21670.1 18541146
AT3G49250.1 Bra020905.1-P AT4G21670.1 18541146
AT3G49250.1 Bra038764.1-P AT4G21670.1 18541146
AT3G49250.1 Bra017699.1-P AT4G35160.1 21798944
AT3G49250.1 Bra017700.1-P AT4G35160.1 21798944
AT3G49250.1 Bra034677.1-P AT4G35160.1 21798944
AT3G49250.1 Bra034678.1-P AT4G35160.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY00194 Canola cytosol 99.74 95.05
AT3G49250.1 Thale cress cytosol 75.06 68.81
Bra017998.1-P Field mustard cytosol 74.29 66.2
Solyc03g071800.1.1 Tomato cytosol 24.16 57.41
Solyc11g032150.1.1 Tomato cytosol, extracellular, nucleus 10.13 54.17
Solyc03g071820.1.1 Tomato cytosol 21.04 53.29
Solyc03g071790.1.1 Tomato cytosol 29.61 48.93
GSMUA_Achr10P... Banana cytosol 41.56 46.92
VIT_16s0098g01820.t01 Wine grape cytosol 50.91 45.48
KRH64437 Soybean cytosol, nucleus 49.87 44.04
Zm00001d053353_P001 Maize cytosol 29.09 41.95
Solyc11g032160.1.1 Tomato endoplasmic reticulum, extracellular 15.06 41.43
Zm00001d013511_P001 Maize cytosol 30.65 40.97
Solyc03g083210.2.1 Tomato cytosol, nucleus 46.23 40.73
KXG31464 Sorghum cytosol 41.56 39.51
Solyc06g051990.2.1 Tomato cytosol 46.23 38.12
Os01t0235200-02 Rice cytosol 41.3 38.04
KRH53504 Soybean plastid 39.22 37.01
TraesCS3B01G185200.1 Wheat cytosol 41.56 35.09
TraesCS3A01G158200.1 Wheat cytosol 41.3 34.87
TraesCS3D01G165900.1 Wheat cytosol 41.3 34.87
HORVU3Hr1G057390.1 Barley cytosol 40.52 32.57
Zm00001d050870_P001 Maize cytosol 15.58 29.85
Solyc03g083170.2.1 Tomato cytosol 45.71 22.62
Bra009745.1-P Field mustard nucleus 26.23 6.32
Bra009741.1-P Field mustard cytosol 23.12 5.69
Protein Annotations
EnsemblPlants:Bra019588.1EnsemblPlants:Bra019588.1-PEnsemblPlantsGene:Bra019588ncoils:CoilPANTHER:PTHR33566PANTHER:PTHR33566:SF1
SEG:segUniParc:UPI000253EF7EUniProt:M4DSU5MapMan:12.5.1.14.2::
Description
AT3G49250 (E=6e-146) DMS3 | DMS3 (DEFECTIVE IN MERISTEM SILENCING 3)
Coordinates
chrA06:+:11941589..11943042
Molecular Weight (calculated)
42500.9 Da
IEP (calculated)
8.571
GRAVY (calculated)
-0.391
Length
385 amino acids
Sequence
(BLAST)
001: MMMVDPKETT QNGGGISQAE FALFTSNRIQ SDLEAMGIKL KTHEDSLKFL KAQKTKLDES ILDLQVHMNK LNPSGTPRSE NCDGNLQGED INEQILRHAN
101: SAAAVLTHVQ SRHSPQVTLT KGVVGVVAKL GKVHDENLSQ VLSDYLGTRS MLALVCKDYD SVKGLESYDS QGNVDRNAGL HGLGSSIGRT IEGHFDAISL
201: ENLRPYVGQF IAGDPQRRLN LLKPKLPNGE YPPGFLGFAV NMIQIDPAYL LCVTAYGHGL RETLFYSLFS RLQVYKTRAD MISALPCISE GAVSLDGGIV
301: RTGGILTLGS SDEVKLRFAK PNASRAMDNH SEAERQMKEL KQKKEKTLED IKRTQVLRDH AVYNFGKKKD EFVRFLAQSS STSMR
Best Arabidopsis Sequence Match ( AT3G49250.1 )
(BLAST)
001: MYPTGQQISF QTTPLNVQDP TRMMNLDQSS PVARNETQNG GGIAHAEFAM FNSKRLESDL EAMGNKIKQH EDNLKFLKSQ KNKMDEAIVD LQVHMSKLNS
101: SPTPRSENSD NSLQGEDINA QILRHENSAA GVLSLVETLH GAQASQLMLT KGVVGVVAKL GKVNDENLSQ ILSNYLGTRS MLAVVCRNYE SVTALEAYDN
201: HGNIDINAGL HCLGSSIGRE IGDSFDAICL ENLRPYVGQH IADDLQRRLD LLKPKLPNGE CPPGFLGFAV NMIQIDPAYL LCVTSYGYGL RETLFYNLFS
301: RLQVYKTRAD MISALPCISD GAVSLDGGII RKTGIFNLGN RDEVNVRFAK PTASRTMDNY SEAEKKMKEL KWKKEKTLED IKREQVLREH AVFNFGKKKE
401: EFVRCLAQSS CTNQPMNTPR
Arabidopsis Description
DMS3IDN1 [Source:UniProtKB/TrEMBL;Acc:A0A178VBM0]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.